Conversion of AFLP fragments tightly linked to SCMV resistance genes SCMVl and SCMV2 into simple PCR-based markers

Theoretical and Applied Genetics

Volumn 105, Issue 8, 2002, Pages 1190-1195

  Dussle, C M ^a   Quint, M ^a   Xu, M L ^a,b   Melchinger, A E ^a   Lübberstedt, Thomas ^a,c  

^a UNIVERSITY OF HOHENHEIM   (Germany)

^b YANGZHOU UNIVERSITY   (China)

^c DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

Author keywords

AFLP; CAPS; Indel marker; Maize; Marker conversion; Sugarcane mosaic virus (SCMV)

Indexed keywords

BIOMARKERS; MAPPING; VIRUSES;

POLYMERASE CHAIN REACTION (PCR);

GENES;

EMBRYOPHYTA; SACCHARUM HYBRID CULTIVAR; SUGARCANE MOSAIC VIRUS; ZEA MAYS;

EID: 0036927760     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-0964-7     Document Type: Article

References (31)

1. Barret P, Delourme R, Foisset N, Renard M (1998) Development of a SCAR (sequence characterized amplified region) marker for molecular tagging of the dwarf BREIZH (Bzh) gene in Brassica napus L. Theor Appl Genet 97:828-833
2. Borchardt DC, Weissleder KK (2000) Marker-assisted selection in sugar beet: A breeder's perspective. In: Gallais A, Dillmann C, Goldringer I (eds) EUCARPIA Quantitative genetics and breeding methods: the way ahead. Proc Meet EUCARAPIA Sect Biometrics Plant Breed. INRA, Yessailles, pp 213-220
3. 2 locus to a simple, codominant PCR-based marker form. Theor Appl Genet 97:960-967
4. Bradshaw HD Jr, Villar M, Watson BD, Otto KG, Stewart S, Stettler RF (1994) Molecular genetics of growth and development in Populus. III. A genetic linkage map of a hybrid poplar composed of RFLP, STS, and RAPD markers. Theor Appl Genet 89:167-178
5. Cheung WY, Champagne G, Hubert N, Landry BS (1997) Comparison of the genetic maps of Brassica napus and Brassica oleracea. Theor Appl Genet 94:569-582
6. DeJong W, Forsyth A, Leister D, Gebhardt C, Baulcombe DC (1997) A potato hypersensitive resistance against potato virus X maps to a resistance gene cluster on chromosome 5. Theor Appl Genet 95:246-252
7. Dussle CM, Melchinger AE, Kuntze L, Stork A, Lübberstedt T (2000) Molecular mapping and gene action of Scm1 and Scm2, two major QTL contributing to SCMV resistance in maize. Plant Breed 119:299-303
8. Fuchs E, Grüntzig M (1995) Influence of sugarcane mosaic virus (SCMV) and maize dwarf mosaic virus (MDMV) on the growth and yield of two maize varieties. J. Plant Dis Protect 102:44-50
9. Gaut BS, Doebley JF (1997) DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci USA 94:6809-6814
10. Green P, Falls K, Crooks S (1990) CRI-MAP, Version 2.4. http://biobase.dk/Embnetut/Crimap
11. Jung G, Skroch PW, Nienhuis J, Coyne DP, Arnaud-Santana E, Ariyarathne HM, Marita JM (1999) Confirmation of QTL associated with common bacterial blight resistance in four different genetic backgrounds in common bean. Crop Sci 39:1448-1455
12. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12:172-175
13. Kuntze L, Fuchs E, Grüntzig M, Schulz B, Klein D, Melchinger AE (1997) Resistance of early-maturing European maize germplasm to sugarcane mosaic virus (SCMV) and maize dwarf mosaic virus (MDMV). Plant Breed 116:499-501
14. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genetics 1:174-181
15. Lübberstedt T, Xia XC, Xu ML, Kuntze L, Melchinger AE (1999) Inheritance of resistance to SCMV and MDMV in European maize. In: Mugnozza GTS (ed) Proc 15th EUCARPIA 1998 Gen Congr Genet Breed Crop Quality Resistance. Kluwer, Dordrecht, pp 241-250
16. McMullen MD, Simcox KD (1995) Genomic organization of disease and insect resistance genes in maize. Mol Plant Microbe Interact 8:811-815
17. Meksem K, Ruben E, Hyten D, Triwitayakorn K, Lightfoot (2001) Conversion of AFLP bands into high-throughput DNA markers. Mol Gen Genet 265:207-214
18. Melchinger AE, Kuntze L, Gumber RK, Lübberstedt T, Fuchs E (1998) Genetic basis of resistance to sugarcane mosaic virus in European maize germplasm. Theor Appl Genet 96:1151-1161
19. Meyers BC, Chin DB, Shen KA, Sivaramakrishnan S, Lavelle DO, Zhang Z, Michelmore RW (1998) The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. Plant Cell 10:1817-1832
20. Negi MS, Devic M, Delseny M, Lakshmikumaran M (2000) Identification of AFLP fragments linked to seed coat color in Brassica juncea and conversion to SCAR marker for rapid selection. Theor Appl Genet 101:146-152
21. Paran I, Michelmore RW (1993) Development of reliable PCR-based markers linked to downy mildew resistance in lettuce. Theor Appl Genet 85:985-993
22. Rafalski JA, Ching A, Bhattramakki D, Morgante M, Dolan M, Register JC, Smith OS, Tingey S (2001) SNP markers in matze: Discovery and applications. In: Grant D, Lazo G, Carollo V, Marshall K (eds) Plant Anita Genome 9th Conf
23. Reamon-Büttner SM, Jung C (2000) AFLP-derived STS markers for the identification of sex in Asparagus officinalis L. Theor Appl Genet 100:432-438
24. Shan X, Blake TK, Talbert LE (1999) Conversion of AFLP markers to sequence-specific PCR markers in barley and wheat. Theor Appl Genet 98:1072-1078
25. Useche F, Morgante M, Hanafey M, Tingey S, Martins W, Gao GR, Rafalski A (2001) Computer detection of single nucleotide polymorphisms (SNPs) in maize ESTs. In: Grant D, Lazo G, Carollo V, Marshall K (eds) Plant Anim Genome 9th Conf. San Deigo, p 144
26. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
27. Vuylsteke M, Mank R, Antonise R, Bastiaans E, Senior ML, Stuber CW, Melchinger AE, Lübberstedt T, Xia XC, Stam P, Zabeau M, Kuiper M (1999) Two high-density AFLP linkage maps of Zea mays L.: Analysis of distribution of AFLP markers. Theor Appl Genet 99:921-935
28. Xia XC, Melchinger AE, Kuntze L, Lübberstedt T (1999) QTL mapping of resistance to sugarcane mosaic virus in maize. Phythopathology 89:660-667
29. Xu ML, Melchinger AE, Xia XC, Lübberstedt T (1999) High-resolution mapping of loci conferring resistance to sugarcane mosaic virus in maize using RFLP, SSR and AFLP markers. Mol Gen Genet 261:574-581
30. Xu ML, Melchinger AE, Lübberstedt T (2000) Origin of Scm1 and Scm2 - Two loci conferring resistance to sugarcane mosaic virus (SCMV) in maize. Theor Appl Genet 100:934-941
31. Xu ML, Huaracha E, Korban SS (2001) Development of sequence-characterized amplified regions (SCARs) from amplified fragment length polymorphism (AFLP) markers tightly linked to the Vf gene in apple. Genome 44:63-70