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Volumn 77, Issue 4, 2002, Pages 535-546

Outline of phylogeny and character evolution in Rhizocarpon (Rhizocarpaceae, lichenized Ascomycota) based on nuclear ITS and mitochondrial SSU ribosomal DNA sequences

Author keywords

Catolechia; Lichen; MCMC; Parsimony; Poeltinula

Indexed keywords

LICHEN; PHYLOGENY;

EID: 0036909575     PISSN: 00244066     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1095-8312.2002.00127.x     Document Type: Article
Times cited : (37)

References (46)
  • 1
    • 0034836861 scopus 로고    scopus 로고
    • The potential of mitochondrial DNA for establishing phylogeny and stabilising generic concepts in the parmelioid lichens
    • Crespo A, Blanco O, Hawksworth DL. 2001. The potential of mitochondrial DNA for establishing phylogeny and stabilising generic concepts in the parmelioid lichens. Taxon 50: 807-819.
    • (2001) Taxon , vol.50 , pp. 807-819
    • Crespo, A.1    Blanco, O.2    Hawksworth, D.L.3
  • 4
    • 0002283505 scopus 로고
    • Revision der europäischen arten der flechtengattung rhizocarpon mit nichtgelben lager und vielzelligen sporen
    • Feuerer T. 1991. Revision der europäischen arten der flechtengattung rhizocarpon mit nichtgelben lager und vielzelligen sporen. Bibliotheca Lichenologica 39: 1-218.
    • (1991) Bibliotheca Lichenologica , vol.39 , pp. 1-218
    • Feuerer, T.1
  • 7
    • 0002228137 scopus 로고    scopus 로고
    • A provisional re-assessment of the non-yellow species of Rhizocarpon occuring in the British Isles
    • Fryday AM. 1996. A provisional re-assessment of the non-yellow species of Rhizocarpon occuring in the British Isles. British Lichen Society Bulletin 78: 29-40.
    • (1996) British Lichen Society Bulletin , vol.78 , pp. 29-40
    • Fryday, A.M.1
  • 8
    • 0033849853 scopus 로고    scopus 로고
    • On Rhizocarpon obscuratum (Ach.) Massal, with notes on some related species in the British Isles
    • 10.1006/lich.2000.0269
    • Fryday AM. 2000. On Rhizocarpon obscuratum (Ach.) Massal, with notes on some related species in the British Isles. Lichenologist 32: 207-224. 10.1006/lich.2000.0269.
    • (2000) Lichenologist , vol.32 , pp. 207-224
    • Fryday, A.M.1
  • 9
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes - Application to the identification of mycorrhizae and rusts
    • Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes - Application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113-118.
    • (1993) Molecular Ecology , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 10
    • 0012189880 scopus 로고
    • The Rhizocarpon species with peltate areoles occurring in Europe and North America
    • Gelting P. 1954. The Rhizocarpon species with peltate areoles occurring in Europe and North America. Botanisk Tidsskrift 51: 71-92.
    • (1954) Botanisk Tidsskrift , vol.51 , pp. 71-92
    • Gelting, P.1
  • 11
    • 0012189881 scopus 로고
    • Poeltinula Hafellner (1984)
    • Purvis OW, Coppins BJ, Hawksworth DL, James PW, Moore DM, eds. London: Natural History Museum Publications
    • Gilbert OL, Coppins BJ. 1992. Poeltinula Hafellner (1984). In: Purvis OW, Coppins BJ, Hawksworth DL, James PW, Moore DM, eds. The Lichen Flora of Great Britain and Ireland. London: Natural History Museum Publications, 531-542.
    • (1992) The Lichen Flora of Great Britain and Ireland , pp. 531-542
    • Gilbert, O.L.1    Coppins, B.J.2
  • 12
    • 0033850590 scopus 로고    scopus 로고
    • The lichen vegetation of lake margins in Britain
    • doi: 10.1006/lich.200.0270
    • Gilbert OL, Giavarani V. 2000. The lichen vegetation of lake margins in Britain. Lichenologist 32: 365-386. doi: 10.1006/lich.200.0270.
    • (2000) Lichenologist , vol.32 , pp. 365-386
    • Gilbert, O.L.1    Giavarani, V.2
  • 13
    • 0029068893 scopus 로고
    • Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites
    • Gu X, Fu Y-X, Li W-H. 1995. Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Molecular Biology and Evolution 12: 546-557.
    • (1995) Molecular Biology and Evolution , vol.12 , pp. 546-557
    • Gu, X.1    Fu, Y.-X.2    Li, W.-H.3
  • 14
    • 0000942336 scopus 로고
    • Catolechia flotow ex massalongo emend. Körber und epilichen clements ex hafellner - Zwei nahe verwandte flechtengattungen
    • Hafellner J. 1978. Catolechia flotow ex massalongo emend. Körber und epilichen clements ex hafellner - Zwei nahe verwandte flechtengattungen. Nova Hedwigia 30: 673-695.
    • (1978) Nova Hedwigia , vol.30 , pp. 673-695
    • Hafellner, J.1
  • 15
    • 0000746714 scopus 로고
    • Studien in richtung einer natürlicheren gliederung der sammelfamilien lecanoraceae und lecideaceae
    • Hafellner J. 1984. Studien in richtung einer natürlicheren gliederung der sammelfamilien lecanoraceae und lecideaceae. Beiheft zur Nova Hedwigia 79: 241-371.
    • (1984) Beiheft zur Nova Hedwigia , vol.79 , pp. 241-371
    • Hafellner, J.1
  • 16
    • 0012198706 scopus 로고
    • The evolution and adaption of sexual reproductive structures in the Ascomycotina
    • Rayner ADM, Brasier CM, Moore D, eds. Cambridge: Cambridge University Press
    • Hawksworth DL. 1987. The evolution and adaption of sexual reproductive structures in the Ascomycotina. In: Rayner ADM, Brasier CM, Moore D, eds. Evolutionary Biology of the Fungi. Cambridge: Cambridge University Press, 179-189.
    • (1987) Evolutionary Biology of the Fungi , pp. 179-189
    • Hawksworth, D.L.1
  • 20
    • 0001798940 scopus 로고    scopus 로고
    • Application of the likelihood function in phylogenetic analysis
    • Balding DJ, Bishop M, Cannings C, eds. Chichester: John Wiley & Sons
    • Huelsenbeck JP, Bollback JP. 2001. Application of the likelihood function in phylogenetic analysis. In: Balding DJ, Bishop M, Cannings C, eds. Handbook of Statistical Genetics. Chichester: John Wiley & Sons, 415-443.
    • (2001) Handbook of Statistical Genetics , pp. 415-443
    • Huelsenbeck, J.P.1    Bollback, J.P.2
  • 21
    • 0034733685 scopus 로고    scopus 로고
    • Accomodating phylogenetic uncertainty in evolutionary studies
    • Huelsenbeck JP, Rannala B, Masly JP. 2000. Accomodating phylogenetic uncertainty in evolutionary studies. Science 288: 2349-2350.
    • (2000) Science , vol.288 , pp. 2349-2350
    • Huelsenbeck, J.P.1    Rannala, B.2    Masly, J.P.3
  • 22
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 24
    • 0035145155 scopus 로고    scopus 로고
    • Phylogenetic systematics turns over a new leaf
    • Lewis PO. 2001. Phylogenetic systematics turns over a new leaf. Trends in Ecology and Evolution 16: 30-37.
    • (2001) Trends in Ecology and Evolution , vol.16 , pp. 30-37
    • Lewis, P.O.1
  • 25
    • 0034351388 scopus 로고    scopus 로고
    • Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
    • Lutzoni F, Wagner P, Reeb V, Zoller S. 2000. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Systematic Biology 49: 628-651.
    • (2000) Systematic Biology , vol.49 , pp. 628-651
    • Lutzoni, F.1    Wagner, P.2    Reeb, V.3    Zoller, S.4
  • 27
    • 0034782104 scopus 로고    scopus 로고
    • Why nuclear ribosomal DNA spacers (ITS) tell different stories in Quercus
    • Mayol M, Rosselló JA. 2001. Why nuclear ribosomal DNA spacers (ITS) tell different stories in Quercus. Molecular Phylogenetics and Evolution 19: 167-176.
    • (2001) Molecular Phylogenetics and Evolution , vol.19 , pp. 167-176
    • Mayol, M.1    Rosselló, J.A.2
  • 28
    • 0028097770 scopus 로고
    • Detecting correlated evolution on phylogenies: A general method for the comparative analysis of discrete characters
    • Pagel M. 1994. Detecting correlated evolution on phylogenies: A general method for the comparative analysis of discrete characters. Proceedings of the Royal Society of London, B, Biological Sciences 255: 37-45.
    • (1994) Proceedings of the Royal Society of London, B, Biological Sciences , vol.255 , pp. 37-45
    • Pagel, M.1
  • 29
    • 0033422611 scopus 로고    scopus 로고
    • The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies
    • Pagel M. 1999. The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Systematic Biology 48: 612-622.
    • (1999) Systematic Biology , vol.48 , pp. 612-622
    • Pagel, M.1
  • 30
    • 0012201876 scopus 로고    scopus 로고
    • Phylogenetics: Parsimony and distance methods
    • Balding DJ, Bishop M, Cannings C, eds. Chichester: John Wiley & Sons
    • Penny D, Hendy M. 2001. Phylogenetics: Parsimony and distance methods. In: Balding DJ, Bishop M, Cannings C, eds. Handbook of Statistical Genetics. Chichester: John Wiley & Sons, 445-484.
    • (2001) Handbook of Statistical Genetics , pp. 445-484
    • Penny, D.1    Hendy, M.2
  • 31
    • 0002886137 scopus 로고
    • On reductions of morphological structures in lichens
    • Poelt J. 1987. On reductions of morphological structures in lichens. Bibliotheca Lichenologica 25: 35-45.
    • (1987) Bibliotheca Lichenologica , vol.25 , pp. 35-45
    • Poelt, J.1
  • 32
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 9: 817-818.
    • (1998) Bioinformatics , vol.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 33
    • 0012159418 scopus 로고
    • Rhizocarpon Lam. ex DC. (1805)
    • Purvis OW, Coppins BJ, Hawksworth DL, James PW, Moore DM, eds. London: Natural History Museum Publications
    • Purvis OW, James PW, Holtan-Hartwig J, Timdal E, Clayden SC. 1992. Rhizocarpon Lam. ex DC. (1805). In: Purvis OW, Coppins BJ, Hawksworth DL, James PW, Moore DM, eds. The Lichen Flora of Great Britain and Ireland. London: Natural History Museum Publications, 531-542.
    • (1992) The Lichen Flora of Great Britain and Ireland , pp. 531-542
    • Purvis, O.W.1    James, P.W.2    Holtan-Hartwig, J.3    Timdal, E.4    Clayden, S.C.5
  • 34
    • 0002054484 scopus 로고
    • Studies in Rhizocarpon II. Distribution and ecology of the yellow species in Europe
    • Runemark H. 1956. Studies in Rhizocarpon II. Distribution and ecology of the yellow species in Europe. Opera Botanica 2: 1-150.
    • (1956) Opera Botanica , vol.2 , pp. 1-150
    • Runemark, H.1
  • 35
    • 0034901663 scopus 로고    scopus 로고
    • Molecular data support rejection of the generic concept in the Coccotremataceae (Ascomycota)
    • doi: 10.1006/lich.2001.0325
    • Schmitt I, Messuti MI, Feige GB, Lumbsch HT. 2001. Molecular data support rejection of the generic concept in the Coccotremataceae (Ascomycota). Lichenologist 33: 315-321. doi: 10.1006/lich.2001.0325.
    • (2001) Lichenologist , vol.33 , pp. 315-321
    • Schmitt, I.1    Messuti, M.I.2    Feige, G.B.3    Lumbsch, H.T.4
  • 36
    • 0345676554 scopus 로고    scopus 로고
    • Multiple sequence alignment with the divide-and-conquer method
    • Stoye J. 1998. Multiple sequence alignment with the divide-and-conquer method. Gene 211: GC45-GC56.
    • (1998) Gene , vol.211
    • Stoye, J.1
  • 38
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 39
    • 0012196546 scopus 로고
    • Notes on Rhizocarpon in the arctic
    • Thomson JW. 1967. Notes on Rhizocarpon in the arctic. Nova Hedwigia 14: 421-481.
    • (1967) Nova Hedwigia , vol.14 , pp. 421-481
    • Thomson, J.W.1
  • 40
    • 0002727703 scopus 로고
    • A preliminary key to Rhizocarpon in Scandinavia
    • Timdal E, Holtan-Hartwig J. 1988. A preliminary key to Rhizocarpon in Scandinavia. Graphis Scripta 2: 41-54.
    • (1988) Graphis Scripta , vol.2 , pp. 41-54
    • Timdal, E.1    Holtan-Hartwig, J.2
  • 41
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. San Diego: Academic Press
    • White TJ, Bruns TD, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols: A Guide to Methods and Applications. San Diego: Academic Press, 315-322.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.D.2    Lee, S.3    Taylor, J.4
  • 42
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang Z. 1993. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Molecular Biology and Evolution 10: 1396-1401.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 43
    • 0028064845 scopus 로고
    • Maximum-likelihood phylogenetic estimation from DNA sequences whith variable rates over sites: Approximate methods
    • Yang Z. 1994. Maximum-likelihood phylogenetic estimation from DNA sequences whith variable rates over sites: Approximate methods. Journal of Molecular Evolution 39: 306-314.
    • (1994) Journal of Molecular Evolution , vol.39 , pp. 306-314
    • Yang, Z.1
  • 45
    • 0034769806 scopus 로고    scopus 로고
    • Primers for the amplification of mt SSU rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi
    • Zhou S, Stanosz GR. 2001. Primers for the amplification of mt SSU rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi. Mycological Research 105: 1033-1044.
    • (2001) Mycological Research , vol.105 , pp. 1033-1044
    • Zhou, S.1    Stanosz, G.R.2
  • 46
    • 0032714017 scopus 로고    scopus 로고
    • PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming Ascomycetes
    • doi: lich 1999.0220
    • Zoller S, Scheidegger C, Sperisen C. 1999. PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming Ascomycetes. Lichenologist 31: 511-516. doi: lich 1999.0220.
    • (1999) Lichenologist , vol.31 , pp. 511-516
    • Zoller, S.1    Scheidegger, C.2    Sperisen, C.3


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