Expression profile and genome location of cDNA clones from an infant human trabecular meshwork cell library

Investigative Ophthalmology and Visual Science

Volumn 43, Issue 12, 2002, Pages 3698-3704

  Wirtz, Mary K ^a   Samples, John R ^a   Xu, Hong ^a   Severson, Tesa ^a   Acott, Ted S ^a  

^a OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; ELONGATION FACTOR 1ALPHA; FERRITIN; FERRITIN H; FERRITIN L; FIBRONECTIN; MESSENGER RNA; SCLEROPROTEIN; TISSUE INHIBITOR OF METALLOPROTEINASE 1; UNCLASSIFIED DRUG;

ARTICLE; DATA BASE; DNA LIBRARY; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE LOCATION; GLAUCOMA; HUMAN; HUMAN TISSUE; INTERNET; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; TRABECULAR MESHWORK;

CELLS, CULTURED; EYE PROTEINS; GENE EXPRESSION PROFILING; GENE LIBRARY; GENOME; GLAUCOMA; HUMANS; INFANT; INFANT, NEWBORN; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; TRABECULAR MESHWORK;

EID: 0036902586     PISSN: 01460404     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (59)

1. Civan MM. Transport components of net secretion of the aqueous humor and their integrated regulation. In: Civan, MM, ed. The Eye's Aqueous Humor. Vol. 45. San Diego: Academic Press; 1998:1-18.
2. Hitchings R, Tan J. Target pressure. J Glaucoma. 2001;10(suppl 1):568-570.
3. Lütjen-Drecoll E, Gabelt BT, Tian B, Kaufman PL. Outflow of aqueous humor. J Glaucoma. 2001;10(suppl 1):S42-S44.
4. Acott TS, Wirtz MK. Biochemistry of aqueous outflow. In: Ritch R, Shields MB, Krupin T, eds. The Glaucomas. Vol. 1. St. Louis: Mosby; 1996:281-306.
5. Quigley HA. Number of people with glaucoma worldwide. Br J Ophthalmol. 1996;80:389-393.
6. Raymond V. Molecular genetics of the glaucomas: Mapping of the first five "GLC" loci. Am J Hum Genet. 1997;60:272-277.
7. Wirtz MK, Samples JR, Kramer PL, et al. Mapping a gene for adult-onset primary open-angle glaucoma to chromosome 3q. Am J Hum Genet. 1997;60:296-304.
8. Wirtz MK, Samples JR, Rust K, et al. GLC1F, a new primary open-angle glaucoma locus, maps to 7q35-q36. Arch Ophthalmol. 1999;117:237-241.
9. Sarfarazi M, Child A, Stoilova D, et al. Localization of the fourth locus (GLC1E) for adult-onset primary open-angle glaucoma to the 10p15-p14 region. Am J Hum Genet. 1998;62:641-652.
10. Trifan OC, Traboulsi E.I., Stoilova D, et al. A third locus (GLC1D) focus for adult-onset primary open-angle glaucoma maps to the 8q23 region. Am J Ophthalmol. 1998;126:17-28.
11. Stoilova D, Child A, Trifan OC, et al. Localization of a locus (GLC1B) for adult-onset primary open angle glaucoma to the 2cen-q13 region. Genomics. 1996;36:142-150.
12. Sheffield VC, Stone EM, Alward WLM, et al. Genetic linkage of familial open angle glaucoma to chromosome 1q21-q31. Nat Genet. 1993;4:47-50.
13. Stone EM, Fingert JH, Alward WLM, et al. Identification of a gene that causes primary open angle glaucoma. Science. 1997;275: 668-670.
14. Rezaie T, Child A, Hitchings R, et al. Adult-onset primary open-angle glaucoma caused by mutations in optineurin. Science. 2002; 295:1077-1079.
15. Okubo K, Hori N, Matoba R, et al. Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nat Genet. 1992;2:173-179.
16. Shimizu-Matsumoto A, Adachi W, Mizuno K, et al. An expression profile of genes in human retina and isolation of a complementary DNA for a novel rod photoreceptor protein. Invest Ophthalmol Vis Sci. 1997;38:2576-2585.
17. Yamada S, Murakami S, Matoba R, et al. Expression profile of active genes in human periodontal ligament and isolation of PLAP-1, a novel SLRP family gene. Gene. 2001;275:279-286.
18. Alexander JP, Samples JR, Van Buskirk EM, Acott TS. Expression of matrix metalloproteinases and inhibitor by human trabecular meshwork. Invest Ophthalmol Vis Sci. 1991;32:172-180.
19. Xu H, Acott TS, Wirtz MK. Identification and expression of a novel type I procollagen C-proteinase enhancer protein gene from the glaucoma candidate region on 3q21-24. Genomics. 2000;66: 264-273.
20. Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature. 2001;409:860-921.
21. Venter JC, Adams MD, Myers EW, et al. The sequence of the human genome. Science. 2001;291:1304-1351.
22. Adams MD, Kerlavage AR, Fleischman RD, et al. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature. 1995;28(suppl): 33-174.
23. Gonzalez P, Epstein DL, Borras T. Characterization of gene expression in human trabecular meshwork using single-pass sequencing of 1060 clones. Invest Ophthalmol Vis Sci. 2000;41:3678-3693.
24. Bradley JMB, Anderssohn AM, Colvis CM, et al. Mediation of laser trabeculoplasty-induced matrix metalloproteinase expression by II-1β and TNFα. Invest Ophthalmol Vis Sci. 2000;41:422-430.
25. Baxter RC. Insulin-like growth factor (IGF)-binding proteins: Interactions with IGFs and intrinsic bioactivities. Am J Physiol Endocrinol Metab. 2000;278:E967-E976.
26. Polansky JR, Fauss DJ, Chen P, et al. Cellular pharmacology and molecular biology of the trabecular meshwork inducible glucocorticoid response gene product. Ophthalmologica. 1997;211: 126-139.
27. Clark AF, Steely HT, Dickerson JEJ, et al. Glucocorticoid induction of the glaucoma gene MYOC in human and monkey trabecular meshwork cells and tissues. Invest Ophthalmol Vis Sci. 2001;42: 1769-1780.
28. Wentz-Hunter K, Ueda J, Shimizu N, Yue BYJT. Myocilin is associated with mitochondria in human trabecular meshwork cells. J Cell Physiol. 2002;190:46-53.
29. O'Brien ET, Metheney CD, Polansky JR. Immunofluorescence method for quantifying the trabecular meshwork glucocorticoid response (TIGR) protein in trabecular meshwork and Schlemm's canal cells. Curr Eye Res. 1999;19:517-524.
30. Stamer WD, Roberts BC, Howell DN, Epstein DL. Isolation, culture, and characterization of endothelial cells from Schemm's canal. Invest Ophthalmol Vis Sci. 1998;39:1804-1812.
31. Alward WL, Semina EV, Kalenak JW, et al. Autosomal dominant iris hypoplasia is caused by a mutation in the Rieger syndrome (RIEG/ PITX2) gene. Am J Ophthalmol. 1998;125:98-100.
32. Kulak SC, Kozlowski K, Semina EV, Pearce WG, Walter MA. Mutation in the RIEG1 gene in patients with iridogoniodysgenesis syndrome. Hum Mol Genet. 1998;7:1113-1117.
33. Amendt BA, Sutherland LB, Semina EV, Russo AF. The molecular basis of Rieger syndrome: Analysis of Pitx2 homeodomain protein activities. J Biol Chem. 1998;273:20066-20072.
34. Stoilov I, Akarsu AN, Sarfarazi M. Identification of three different truncating mutations in cytochrome P4501B1 (CYP1B1) as the principal cause of primary congenital glaucoma (buphthalmos) in families linked to the GLC3A locus on chromosome 2p21. Hum Mol Genet. 1997;6:641-647.
35. Tripathi BJ, Tripathi RC, Wisdom JE. Embryology of the anterior segment of the human eye. In: Ritch R, Shields MB Krupin T, eds. The Glaucomas. Vol. 1. St. Louis: Mosby; 1996:3-38.
36. Sasaki N, Nagaoka S, Itoh M, et al. Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones. Genomics. 1998;49:167-179.
37. Boyd D, Vecoli C, Belcher DM, Jain SK, Drysdale JW. Structural and functional relationships of human ferritin H and L chains deduced from cDNA clones. J Biol Chem. 1985;260:11755-11761.
38. Beard JL. Iron biology in immune function, muscle metabolism and neuronal functioning. J Nutr. 2001;131:568S-580S.
39. Gdaniec Z, Sierzputowska-Gracz H, Theil EC. Iron regulatory element and internal loop/bulge structure for ferritin mRNA studied by cobalt(III) hexamine binding, molecular modeling, and NMR spectroscopy. Biochemistry. 1998;37:1505-1512.
40. Connor JR, Menzies SL. Relationship of iron to oligodendrocytes and myelination. Glia. 1996;17:83-93.
41. Strelau J, Sullivan A, Bottner M, et al. Growth/differentiation factor-15/macrophage inhibitory cytokine-1 is a novel trophic factor for midbrain dopaminergic neurons in vivo. J Neurosci. 2000;20: 8597-8603.
42. Wirtz MK, Xu H, Rust K, Alexander JP, Acott TS. Insulin-like growth factor binding protein-5 expression by human trabecular meshwork. Invest Ophthalmol Vis Sci. 1998;39:45-53.
43. Hoskins HD, Kass MA. Aqueous humor outflow. In: Diagnosis and Therapy of the Glaucomas. St. Louis: CV Mosby Co.; 1989:41-66.
44. Shields MB. Aqueous humor dynamics. I. Anatomy and physiology. Baltimore: Williams & Wilkins; 1992:5-36. Shields MB, ed. Textbook of Glaucoma.
45. Wang N, Chintala SK, Fini ME, Schuman JS. Activation of a tissue-specific stress response in the aqueous outflow pathway of the eye defines the glaucoma disease phenotype. Nat Med. 2001;7: 304-309.
46. Cai S, Liu X, Glasser A, et al. Effect of latrunculin-A on morphology and actin-associated adhesions of cultured human trabecular meshwork cells. Mol Vis. 2000;6:132-143.
47. Tripathi BJ, Tripathi RC. Effect of epinephrine in vitro on the morphology, phagocytosis, and mitotic activity of human trabecular endothelium. Exp Eye Res. 1984;39:731-744.
48. de Kater AW, Shahsafaei A, Epstein DL. Localization of smooth muscle and nonmuscle actin isoforms in the human aqueous outflow pathway. Invest Ophthalmol Vis Sci. 1992;33:424-429.
49. Gibson IK, Anderson RA. Actin filaments in cells of human trabecular meshwork and Schlemm's canal. Invest Ophthalmol Vis Sci. 1979;18:547-561.
50. Tamm ER, Siegner A, Baur A, Lütjen-Drecoll E. Transforming growth factor-beta 1 induces alpha-smooth muscle-actin expression in cultured human and monkey trabecular meshwork. Exp Eye Res. 1996;62:389-397.
51. Floyd BB, Cleveland PH, Worthen DM. Fibronectin in human trabecular drainage channels. Invest Ophthalmol Vis Sci. 1985;26: 797-804.
52. Sato T, Roy S. Effect of high glucose on fibronectin expression and cell proliferation in trabecular meshwork cells. Invest Ophthalmol Vis Sci. 2002;43:170-175.
53. Hann CR, Springett MJ, Wang X, Johnson DH. Ultrastructural localization of collagen IV, fibronectin, and laminin in the trabecular meshwork of normal and glaucomatous eyes. Ophthalmic Res. 2001;33:314-324.
54. Filla MS, Liu X, Nguyen TD, et al. In vitro localization of TIGR/MYOC in trabecular meshwork extracellular matrix and binding to fibronectin. Invest Ophthalmol Vis Sci. 2002;43:151-161.
55. Babizhayev MA, Brodskaya MW. Fibronectin detection in drainage outflow system of human eyes in ageing and progression of open-angle glaucoma. Mech Ageing Dev. 1989;47:145-157.
56. Zhou L, Yuhong L, Yue BYJT. Oxidative stress affects cytoskeletal structure and cell-matrix interactions in cells from an ocular tissue: The trabecular meshwork. J Cell Physiol. 1999;180:182-189.
57. Li J, Tripathi BJ, Tripathi RC. Modulation of pre-mRNA splicing and protein production of fibronectin by TGF-beta2 in porcine trabecular cells. Invest Ophthalmol Vis Sci. 2000;41:3437-3443.
58. Anderson PJ, Wang J, Epstein DL. Metabolism of calf trabecular (reticular) meshwork. Invest Ophthalmol Vis Sci. 1980;19:13-20.
59. Sirover MA. Role of the glycolytic protein, glyceraldehyde-3-phosphate dehydrogenase, in normal cell function and in cell pathology. J Cell Biochem. 1997;66:133-140.