DNA-lipid interactions in vitro and in vivo

Bioelectrochemistry

Volumn 58, Issue 1, 2002, Pages 3-12

  Kuvichkin, V V ^a  

^a INSTITUTE OF CELL BIOPHYSICS   (Russian Federation)

Author keywords

Cations; DNA; DNA membrane complexes; Triple complexes

Indexed keywords

BACTERIA; DNA; POSITIVE IONS;

LIPID-NUCLEIC INTERACTIONS;

LIPIDS;

DIVALENT CATION; DNA; LIPID; LIPOSOME; METAL ION; NUCLEIC ACID; PHOSPHOLIPID;

ARTICLE; CELL NUCLEUS; CELL NUCLEUS MATRIX; CELL STRUCTURE; CHROMATIN; EUKARYOTE; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; NUCLEAR PORE; PROKARYOTE;

ANIMALS; CATIONS; CHROMATIN; DNA; DNA, BACTERIAL; HUMANS; LIPID METABOLISM; LIPIDS; LIPOSOMES; MEMBRANE LIPIDS;

BACTERIA (MICROORGANISMS); EUKARYOTA; PROKARYOTA;

EID: 0036877042     PISSN: 15675394     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1567-5394(02)00123-8     Document Type: Article

References (76)

1. Jacob F., Brenner S., Cuzin F. On the regulation of DNA replication in bacteria. Cold Spring Harbor Symp. Quant. Biol. 28:1963;329-348.
2. Ganesan A.T., Lederberg J. A cell-membrane bound fraction of bacterial DNA. Biochem. Biophys. Res. Commun. 18:1965;824-835.
3. Manzoli F.A., Muchmore J.H., Bonora B., Capitani S., Bartoli S. Interaction between sphingomyelin and DNA. Biochim. Biophys. Acta. 277:1972;251-255.
4. Manzoli F.A., Muchmore J.H., Capitani S., Bonora B., Bartoli S. Lipid-DNA interactions: II. Phospholipids, cholesterol, glycerophosphorylcholine, spingosine and fatty acids. Biochim. Biophys. Acta. 340:1974;1-15.
5. Brossius B., Reisner D. Influence of lipid membranes on the conformational transitions of nucleic acids. J. Biomol. Struct. Dyn. 4:1986;271-278.
6. Bichenkov E.E., Budker V.G., Korobeinicheva I.K., Savchenko E.V., Filimonov V.V. DNA interaction with phosphatidilcholine liposomes. Melting of DNA and phase transition of membrane lipids in the complexes. Biol. Membr. (Moscow). 5:1988;501-507.
7. Shabarshina L.I., Sukhorukov B.I., Kuvichkin V.V. Infrared spectroscopic study of DNA-lipid interactions. DNA compacting on disperse particles. Biofizika. 24:1979;990-994.
8. Kuvichkin V.V., Sukhomudrenko A.G. Interaction of natural and synthetic polynucleotides with liposomes in the presence of divalent cations. Biofizika (Mosk.). 32:1987;628-633.
9. Budker V.G., Godovikov A.A., Naumova L.P., Slepneva I.A. Interaction of polynucleotides with natural and model membranes. Nucleic Acids Res. 7:1980;2499-2515.
10. 31P NMR investigation. Bioorg. Him. (Moscow). 10:1984;935-939.
11. 2+ complexes. Biofizika (Mosk.). 35:1990;256-262.
12. 2+-ESR study of complexes of DNA-liposomes. Biofizika (Mosk.). 34:1989;405-409.
13. 2+. Biofizika. 44:1999;430-435.
14. Lasic D.D., Strey H., Stuart M.C.A., Podgornik R., Frederik P.M. The structure of DNA-liposome complexes. J. Am. Chem. Soc. 119:1997;832-833.
15. Huebner S., Battersby B.J., Grimm R., Cevc G. Lipid-DNA complex formation: reorganization and rupture of lipid vesicles in the presence of DNA as observed by cryoelectron microscopy. Biophys. J. 76:1999;3158-3166.
16. Gershon H., Ghirlando R., Guttman S.B., Minsky A. Mode of formation and structural features of DNA-cationic liposome complexes used for transfection. Biochemistry. 32:1993;7143-7151.
17. May S., Ben Shaul A. DNA-lipid complexes: stability of honeycomb-like and spaghetti-like structures. Biophys. J. 73:1997;2427-2440.
18. Zuidam N.J., Barenholz Y. Characterization of DNA-lipid complexes commonly used for gene delivery. Int. J. Pharm. 183:1999;43-46.
19. Harries D., May S., Gelbart W.M., Ben-Shaul A. Structure, stability, and thermodynamics of lamellar DNA-lipid complexes. Biophys. J. 75:1998;159-173.
20. Friend D.S., Papahadjopoulos D., Debs R.J. Endocytosis and intracellular processing accompanying transfection mediated by cationic liposomes. Biochim. Biophys. Acta. 1278:1996;41-50.
21. Montrel M.M., Sukhorukov G.B., Petrov A.I., Shabarchina L.I., Sukhorukov B.I. Spectroscopic study of thin multilayer films of the complexes with nucleic acids with cationic amphiphiles and polycations: their possible use as sensor elements. Sens. Actuators, B, Chem. 42:1997;225-231.
22. Nicolini C., Erokhin V., Facci P., Guerzoni S., Ross A., Paschkevitsch P. Quartz balance DNA sensor. Biosens. Bioelectron. 12:1997;613-618.
23. Struchkov V.A., Strazhevskaia N.B. DNA-bound lipids from eukaryotic (loach spermatozoa, pigeon erythrocytes) and prokaryotic (E. coli B, phage T2) cells. Biohimia. 55:1990;1266-1275.
24. Viola-Magni M.P., Gahan P.B., Pacy J. Phospholipids in plant and animal chromatin. Cell Biochem. Funct. 3:1985;71-78.
25. Kaznacheev Yu.S., Kulagina T.P., Markevich L.N., Kolomiitseva I.K., Kuzin A.M. Metabolism of chromatin lipids in rat liver and thymus. Mol. Biol. (Mosc.). 18:1984;607-612.
26. Alesenko A.V., Pantaz E.A. Differences in the composition of nuclear and chromatin phospholipids in proliferating rat liver cells after partial hepatectomy. Biohimia (Mosk.). 48:1983;263-268.
27. Gevorkian E.S., Iavroian Zh.V., Panosian G.A. Changes in the phospholipid composition of rat liver chromatin during treatment with hydrocortisone. Ukr. Biohim. Z. (Kiev). 57:1985;78-81.
28. Albi E., Magni M.V., Lazzarini R., Gahan P.B. Chromatin phospholipid changes during rat liver development. Cell Biochem. Funct. 9:1991;119-123.
29. Albi E., Micheli M., Viola Magni M.P. Phospholipids and nuclear RNA. Cell Biol. Int. 20:1996;407-412.
30. Cocco L., Martelli A.M., Billi A.M., Cataldi A., Miscia S., Mottola M.R., Manzoli L. Phospholipids as components of the nuclear matrix: their possible biological significance. Basic Appl. Histochem. 31:1987;413-419.
31. Alesenko A.V., Krasil'nikov V.A., Boikov P.Yu. Participation of sphingomyelin in the formation of a DNA bond with the nuclear matrix in the replication process. Dokl. Akad. Nauk SSSR (Moscow). 273:1983;231-234.
32. Cocco L., Papa S., Maraldi N.M., Santi P., Martelli A.M., Rizzoli R., Manzoli F.A. Chromatin structural transitions following histone H1 displacement by phosphatidylserine vesicles and low pH treatment. A multiparametric analysis involving flow cytometry, electron microscopy, and nuclease digestion. J. Histochem. Cytochem. 36:1988;65-71.
33. Maraldi N.M., Marinelli F., Papa S., Galanzi A., Manzoli F.A. Changes of chromatin organization induced by phospholipids. Basic Appl. Histochem. 31:1987;421-428.
34. Struchkov V.A., Strazevskaya N.B. Structural and functional aspects of nuclear lipids of normal and tumor cells. Biohimia (Mosk.). 65:2000;620-643.
35. Struchkov V.A., Strazevskaya N.B. DNA-binding lipids: composition and possible functions. Biohimia (Mosk.). 58:1993;1154-1174.
36. Capitani S., Cocco L., Maraldi N.M., Papa S., Manzoli F.A. Effect of phospholipids on transcription and ribonucleoprotein processing in isolated nuclei. Adv. Enzyme Regul. 25:1986;425-438.
37. Alesenko A.V., Burlakova E.B. Role of phospholipids in DNA synthesis in mammalian cells. Dokl. Akad. Nauk SSSR (Moscow). 229:1976;199-202.
38. Capitani S., Mazzotti G., Jovine R., Papa S., Maraldi N.M. Effect of phosphatidylcholine vesicles on the activity of DNA polymerase-alpha. Mol. Cell. Biochem. 27:1979;135-138.
39. Novello F., Muchmore J.H., Bonora B., Capitani S., Manzoli F.A. Effect of phospholipids on the activity of DNA polymerase I from E. coli. Ital. J. Biochem. 24:1975;325-334.
40. V.V. Kuvichkin, The role of membrane in organization and gene statement of procaryotes and eucaryotes: I. The DNA-membrane complexes: data about their structure and functions. Moscow, 1982, p. 68. Dep. in VINITI.09.04.82. N 2199-82.
41. V.V. Kuvichkin, The role of membrane in organization and gene statement of procaryotes and eucariotes: II. Quantitative model of DNA-membrane contacts. Moscow, 1982, p. 72. Dep. in VINITI. 09.04.82. N 2388-82.
42. Firshein W., Kim P. Plasmid replication and partition in Escherichia coli: is the cell membrane the key? Mol. Microbiol. 23:1997;1-6.
43. Moyer M.P. The Association of DNA and RNA with membranes. Int. Rev. Cyt. 61:1980;1-61.
44. Bayer M.E. Structural and functional evidence of cooperativity between membranes and cell wall in bacteria. Int. Rev. Cytol. Suppl. 12:1981;39-70.
45. Comings D.E., Okada T.A. DNA replication and the nuclear membrane. J. Mol. Biol. 75:1973;609-618.
46. Harmon J.M., Taber H.W. Some properties of a membrane-deoxyribonucleic acid complex isolated from Bacillus subtilis. J. Bacteriol. 129:1977;789-795.
47. Hobart P., Duncan R., Infante A.A. Association of DNA synthesis with the nuclear membrane in sea urchin embryos. Nature. 267:1977;542-544.
48. Berezney R. The nuclear matrix: a heuristic model for investigating genomic organization and function in the cell nucleus. J. Cell. Biochem. 47:1991;109-123.
49. Pettijohn D.E. Structure and properties of the bacterial nucleoid. Cell. 30:1982;667-669.
50. Murphy L.D., Zimmerman S.B. Stabilization of compact spermidine nucleoids from Escherichia coli under crowded conditions: implications for in vivo nucleoid structure. J. Struct. Biol. 119:1997;336-346.
51. Benyajti C., Worcel A. Isolation, characterization, and structure of the folded interphase genome of Drosophila melanogaster. Cell. 9:1976;393.
52. Sukhorukov B.I., Kuvichkin V.V., Shabarchina L.I. Structure and function of DNA-membrane contact in cells. Biofizika. 25:1980;270-275.
53. Kuvichkin V.V. Theoretical model of DNA-membrane contacts. Biofizika. 28:1983;771-775.
54. Plum G.E., Breslauer K.J. Thermodynamics of an intramolecular DNA triple helix: a calorimetric and spectroscopic study of the pH and salt dependence of thermally induced structural transitions. J. Mol. Biol. 248:1995;679-695.
55. Petukhova O.A., Mittenberg A.G., Kulichkova V.A., Kozhukharova I.V., Ermolaeva Iu.B., Gause L.N., Konstantinova I.M. A new class of small RNP (alpha-RNP) containing antisense RNA in K-562 cells: IV. The coordinated regulation of the expression of Alu-containing mRNA and alpha-RNA during differentiation. Ontogenez. 28:1997;437-444.
56. Buendia B., Courvalin J.C. Domain-specific disassembly and reassembly of nuclear membranes during mitosis. Exp. Cell Res. 230:1997;133-144.
57. Vigers G.P.A., Lohka M.L. A distinct vesicle population targets membranes and pore complexes to the nuclear envelope in Xenopus eggs. J. Cell Biol. 112:1991;545-556.
58. Rytomaa M., Kinnunen P.K. Dissociation of cytochrome c from liposomes by histone H1. Comparison with basic peptides. Biochemistry. 35:1996;4529-4539.
59. Gavilanes J.G., Lizarbe M.A., Munico A.M., Onaderra M. Interaction of dipalmitoyl-phosphatidylcholine with calf thymus histone H1. Int. J. Pept. Protein Res. 26:1985;187-194.
60. Hagstrom J.E., Sebestyen M.G., Budker V.G., Ludtke J.J., Fritz J.D., Wolff J.A. Complexes of non-cationic liposomes and histone H1 mediate efficient transfection of DNA without encapsulation. Biochim. Biophys. Acta, Biomembranes. 1284:1996;47-55.
61. Stoffler D., Goldie K., Feja B., Aebi U. Calcium-mediated structural changes of native nuclear pore complexes monitored by timelapse atomic force microscopy. J. Mol. Biol. 287:1999;741-752.
62. Whytock S., Moir R.D., Stewart M. Selective digestion of nuclear envelopes from Xenopus oocyte germinal vesicles: possible structural role for the nuclear lamina. J. Cell Sci. 97:1990;571-580.
63. Engelhardt P., Plagens U., Zbarsky I.B., Filatova L.S. Granules 25-30 nm in diameter: basic constituent of the nuclear matrix, chromosome scaffold, and nuclear envelope. Proc. Natl. Acad. Sci. U. S. A. 79:1982;6937-6940.
64. Dabauvalle M.C., Loos K., Merkert H., Scheer U. Spontaneous assembly of pore complex-containing membranes ("annulate lamellae") in Xenopus egg extract in the absence of chromatin. J. Cell Biol. 112:1991;1073-1095.
65. Belokhvostov A.S. Extra chromosomal DNAs in cells of mammals. Usp. Sovrem. Biol. (Moscow). 117:1997;433-441.
66. Arlucea J., Andrade R., Alonso R., Arachaga J. The nuclear basket of the nuclear pore complex is part of a higher-order filamentous network that is related to chromatin. J. Struct. Biol. 124:1998;51-58.
67. Cook R. The nucleoskeleton: artefact, passive framework or active site? J. Cell Sci. 90(Pt. 1):1988;1-6.
68. Vann L.R., Wooding F.B., Irvine R.F., Divecha N. Metabolism and possible compartmentalization of inositol lipids in isolated rat-liver nuclei. Biochem. J. 327(Pt. 2):1997;569-576.
69. Neitcheva T., Peeva D. Phospholipid composition, phospholipase A2 and sphingomyelinase activities in rat liver nuclear membrane and matrix. Int. J. Biochem. Cell Biol. 27:1995;995-1001.
70. Martelli A.M., Cocco L., Riederer B.M., Neri L.M. The nuclear matrix: a critical appraisal. Histol. Histopathol. 11:1996;1035-1048.
71. Mattern K.A., van Goethem R.E., de Jong L., van Driel R. Major internal nuclear matrix proteins are common to different human cell types. J. Cell. Biochem. 65:1997;42-52.
72. 2+ ions affect nuclear matrix protein distribution during thermal stabilization of isolated nuclei. J. Histochem. Cytochem. 45:1997;1317-1328.
73. Wiese C., Goldberg M.W., Allen T.D., Wilson K.L. Nuclear envelope assembly in Xenopus extracts visualized by scanning EM reveals a transport-dependent 'envelope smoothing' event. J. Cell Sci. 110:1997;1489-1502.
74. Lebel S., Raymond Y. Lamin B from rat liver nuclei exists both as a lamina protein and as an intrinsic membrane protein. J. Biol. Chem. 259:1984;2693-2696.
75. Filson A.J., Lewis A., Blobel G., Fisher P.A. Monoclonal antibodies prepared against the major Drosophila nuclear matrix-pore complex-lamina glycoprotein bind specifically to the nuclear envelope in situ. J. Biol. Chem. 260:1985;3164-3172.
76. Bruscalupi G., Di Croce L., Lamartina S., Zaccaria M.L., Luzzatto A.C., Trentalance A. Nuclear lamina assembly in the first cell cycle of rat liver regeneration. J. Cell. Physiol. 171:1997;135-142.