A Blumeria graminis f.sp. hordei BAC library - Contig building and microsynteny studies

Current Genetics

Volumn 42, Issue 2, 2002, Pages 103-113

  Pedersen, Carsten ^a   Wu, Boqian ^a,b   Giese, Henriette ^a,c  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b CARLSBERG LABORATORY   (Denmark)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Avirulence; BAC library; Blumeria graminis; Contig; Microsynteny; Single nucleotide polymorphism

Indexed keywords

CONTIG;

ASCOMYCETES; ASPERGILLUS FUMIGATUS; BACTERIAL ARTIFICIAL CHROMOSOME; BACTERIAL VIRULENCE; BLUMERIA GRAMINIS; CONTROLLED STUDY; DNA FINGERPRINTING; EXPRESSED SEQUENCE TAG; GENE ISOLATION; GENE LOCUS; GENE MAPPING; HYBRIDIZATION; MOLECULAR CLONING; NEUROSPORA CRASSA; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVIEW; SCREENING; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SYNTENY; ARTICLE; ASPERGILLUS; CONTIG MAPPING; GENE LIBRARY; GENE ORDER; GENETICS; PATHOGENICITY; VIRULENCE;

ASCOMYCOTA; ASPERGILLUS; ASPERGILLUS FUMIGATUS; BACTERIA (MICROORGANISMS); BLUMERIA GRAMINIS; FUNGI; NEUROSPORA; NEUROSPORA CRASSA;

ASCOMYCOTA; ASPERGILLUS; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CLONING, MOLECULAR; CONTIG MAPPING; GENE LIBRARY; GENE ORDER; NEUROSPORA CRASSA; POLYMORPHISM, SINGLE NUCLEOTIDE; VIRULENCE;

EID: 0036873539     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00294-002-0341-8     Document Type: Review

References (42)

1. Altschul SF, Madden TL, Schäffer AA, Zhang, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Borbye L, Giese H (1994) Genome manipulation in recalcitrant species - Construction and characterization of a yeast artificial chromosome (YAC) library from Erysiphe graminis f. sp. hordei, an obligate fungal pathogen of barley. Gene 144:107-111
3. Borbye L, Linde-Laursen I, Christiansen SK, Giese H (1992) The chromosome complement of Erysiphe graminis f.sp. hordei analysed by light microscopy and field inversion gel electrophoresis. Mycol Res 96:97-102
4. Burge C, Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268:78-94
5. Damgaard C, Nielsen BJ (1999) The effect of fungal density on fungicide dose-response curves in barley powdery mildew (Erysiphe graminis f.sp hordei). Plant Pathol 48:402-407
6. Dangl JL, Jones JDG (2001) Plant pathogens and integrated defence responses to infection. Nature 411:826-833
7. DiazPerez SV, Crouch VW, Orbach MJ (1996) Construction and characterization of a Magnaporthe grisea bacterial artificial chromosome library. Fungal Genet Biol 20:280-288
8. Ellis J, Dodds P, Pryor T (2000) Structure, function and evolution of plant disease resistance genes. Curr Opin Plant Biol 3:278-284
9. Frijters ACJ, Zhang Z, van Damme M, Wang GL, Ronald PC, Michelmore RW (1997) Construction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce. Theor Appl Genet 94:390-399
10. Hamer L, Pan, HQ, Adachi K, Orbach MJ, Page A, Ramamurthy L, Woessner JP (2001) Regions of microsynteny in Magnaporthe grisea and Neurospora crassa. Fungal Genet Biol 33:137-143
11. Halterman D, Zhou FS, Wei FS, Wise R, Schulze-Lefert P (2001) The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria graminis f. sp hordei in barley and wheat. Plant J 25:335-348
12. Jia Y, McAdams SA, Bryan GT, Hershey HP, Valent B (2000) Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO J 19:4004-4014
13. Jørgensen JH (1994) Genetics of powdery mildew resistance in barley. Crit Rev Plant Sci 13:97-119
14. Kim MS, Klopfenstein NB, McDonald GI, Arumuganathan K, Vidaver LK (2000) Characterization of North American Armillaria species by nuclear DNA content and RFLP analysis. Mycologia 92:874 883
15. Konieczny A, Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using codominant ecotype-specific PCR-based markers. Plant J 4:403-410
16. Kupfer DM, Reece A, Clifton SW, Roe BA, Prade RA (1997) Multicellular ascomycetous fungal genomes contain more than 8,000 genes. Fungal Genet Biol 21:364-372
17. Laugé R, De Witt PJGM (1998) Fungal avirulence genes: structure and possible functions. Fungal Genet Biol 24:285-297
18. Leister RT, Katagiri F (2000) A resistance gene product of the nucleotide binding site - leucine rich repeats class can form a complex with bacterial avirulence proteins in vivo. Plant J 22:345-354
19. Li YY, Knobloch O, Hahn HP (2002) An extended boiling method for small-scale preparation of plasmid DNA tailored to long-range automated sequencing. J Biochem Biophys Methods 51:69-74
20. Liu YG, Whittier RF (1995) Thermal asymmetric interlaced PCR - automatable amplification and sequencing of insert end fragments from P and YAC clones for chromosome walking. Genomics 25:674-681
21. Ng WL, Schummer M, Cirisano FD, Baldwin RL, Karlan BY, Hood L (1996) High-throughput plasmid mini preparations facilitated by micro-mixing. Nucleic Acids Res 24:5045-5047
22. Nishimura M, Nakamura S, Hayashi N, Asakawa S, Shimizu N, Kaku H, Hasebe A, Kawasaki S (1998) Construction of a BAC library of the rice blast fungus Magnaporthe grisea and finding specific genome regions in which its transposons tend to cluster. Biosci Biotechnol Biochem 62:1515-1521
23. Pedersen C, Rasmussen SW, Giese H (2002) A genetic map of Blumeria graminis based on functional genes, avirulence genes and molecular markers. Fungal Genet Biol 35:235-246
24. Quanzhou T, Qian Y, Zhao H, Yu S, Qiu L, Wu B, Zhu J, Yu D, Liu X, Hong G (1995) Construction of Oryza sativa genome contigs by fingerprinting strategy. Cell Res 5:263-271
25. Randall TA, Judelson HS (1999) Construction of a bacterial artificial chromosome library of Phytophthora infestans and transformation of clones into P. infestans. Fungal Genet Biol 28:160-170
26. Rasmussen M, Rossen L, Giese H (1993) SINE-like properties of a highly repetitive element in the genome of the obligate parasitic fungus Erysiphe graminis f.sp. hordei. Mol Gen Genet 239:298-303
27. Ridout CJ, Brown JKM (1999) Physical mapping of avirulence genes in the barley powdery mildew pathogen Erysiphe graminis, f.sp. hordei (abstract). The First International Powdery Mildew Conference, Palais des Papes, Avignon, France, 29 August-2 September
28. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring harbor, N.Y.
29. Seoighe C, Federspiel N, Jones T, Hansen N, Bivolarovic V, Surzycki R, Tamse R, Komp, C, Hulzar L, Davis RW, Scherer S, Tait E, Shaw DJ, Harris D, Murphy L, Oliver K, Taylor K, Rajandream MA, Barrell BG, Wolfe KH (2000) Prevalence of small inversions in yeast gene order evolution. Proc Natl Acad Sci USA 97:14433-14437
30. Strong SJ, Ohta Y, Litman GW, Amemiya CT (1997) Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA. Nucleic Acids Res 25:3959-3961
31. Tang X, Frederick RD, Zhou J, Halterman DA, Jia Y, Martin GB (1996) Initiation of plant disease resistance by physical interaction of AvrPto and Pto kinase. Science 274:2060-2063
32. Thomas SW, Rasmussen SW, Glaring MA, Rouster JA, Christiansen SK, Oliver RP (2001). Gene identification in the obligate fungal pathogen Blumeria graminis by expressed sequence tag analysis. Fungal Genet Biol 33:195-211
33. Voglmayr H, Greilhuber J (1998) Genome size determination in Peronosporales (Oomycota) by Feulgen image analysis. Fungal Genet Biol 25:181-195
34. Whisson SC, van derLee T, Bryan GJ, Waugh R, Govers F, Birch PRJ (2001) Physical mapping across an avirulence locus of Phytophthora infestans using a highly representative, large-insert bacterial artificial chromosome library. Mol Gen Genet 266:289-295
35. White FF, Yang B, Johnson LB (2000) Prospects for understanding avirulence gene function. Curr Opin Plant Biol 3:291-298
36. Wiberg A (1974) Sources of resistance to powdery mildew in barley. Hereditas 78:1-40
37. Woo S, Jiang J, Gill B, Paterson A, Wing R (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res 22:4922-4931
38. Zhang HB, Wu CC (2001) BAC as tools for genome sequencing. Plant Physiol Biochem 39:195-209
39. Zhou A (1997) Improved alkaline lysis method for rapid isolation of plasmid DNA. Biotechniques 23:994-994
40. Zhou FS, Kurth J Wei F, Elliott C, Valè G, Yahiaoui N, Keller B, Somerville S, Wise R, Schulze-Lefert P (2001) Cell-autonomous expression of barley Mla1 confers race-specific resistance to the powdery mildew fungus via a Rar 1-independent signaling pathway. Plant Cell 13:337-350
41. Zhu H, Choi SD, Johnston AK, Wing RA, Dean RA (1997) A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: genome analysis, contig assembly, and gene cloning. Fungal Genet Biol 21:337-347
42. Zimmer R, Gibbins AMV (1997) Construction and characterization of a large-fragment chicken bacterial artificial chromosome library. Genomics 42:217-226