-
1
-
-
0033984609
-
Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction
-
Bruno, W. J., N. D. Socci, and A. L. Halpern. 2000. Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction. Mol. Biol. Evol. 17:189-197.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 189-197
-
-
Bruno, W.J.1
Socci, N.D.2
Halpern, A.L.3
-
2
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
4
-
-
0028035267
-
A note on Sattah and Tversky's, Saitou and Nei's, and Studier and Keppler's algorithms for inferring phylogenies from evolutionary distances
-
Gascuel, O. 1994. A note on Sattah and Tversky's, Saitou and Nei's, and Studier and Keppler's algorithms for inferring phylogenies from evolutionary distances. Mol. Biol. Evol. 11:961-963.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 961-963
-
-
Gascuel, O.1
-
5
-
-
0030807655
-
BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
-
-. 1997a. BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14:685-695.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 685-695
-
-
-
6
-
-
0000194822
-
Concerning the NJ algorithm and its unweighted version, UNJ
-
B. Mirkin, F. R. McMorris, F. S. Roberts, and A. Rzhetsky, eds. American Mathematical Society, Providence, R.I.
-
-. 1997b. Concerning the NJ algorithm and its unweighted version, UNJ. Pp. 149-170 in B. Mirkin, F. R. McMorris, F. S. Roberts, and A. Rzhetsky, eds. Mathematical Hierarchies and Biology. American Mathematical Society, Providence, R.I.
-
(1997)
Mathematical Hierarchies and Biology
, pp. 149-170
-
-
-
7
-
-
0011788587
-
Evidence for a relationship between algorithmic scheme and shape of inferred trees
-
W. Gaul, O. Opitz, and M. Schader, eds. Springer, Berlin
-
-. 2000. Evidence for a relationship between algorithmic scheme and shape of inferred trees. Pp. 157-168 in W. Gaul, O. Opitz, and M. Schader, eds. Data Analysis, Scientific Modeling and Practical Applications. Springer, Berlin.
-
(2000)
Data Analysis, Scientific Modeling and Practical Applications
, pp. 157-168
-
-
-
8
-
-
0036221747
-
Efficient biased estimation of evolutionary distances when substitution rates vary across sites
-
Guindon, S., and O. Gascuel. 2002. Efficient biased estimation of evolutionary distances when substitution rates vary across sites. Mol. Biol. Evol. 19:534-543.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 534-543
-
-
Guindon, S.1
Gascuel, O.2
-
9
-
-
0001996348
-
The probabilities of rooted-tree shapes generated by random bifurcation
-
Harding, E. F. 1971. The probabilities of rooted-tree shapes generated by random bifurcation. Adv. Appl. Probab. 3:44-77.
-
(1971)
Adv. Appl. Probab.
, vol.3
, pp. 44-77
-
-
Harding, E.F.1
-
10
-
-
0001464973
-
Estimation of evolutionary distances between homologous nucleotide sequences
-
Kimura, M. 1981. Estimation of evolutionary distances between homologous nucleotide sequences. Proc. Natl. Acad. Sci. USA 78:454-458.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 454-458
-
-
Kimura, M.1
-
11
-
-
0028177080
-
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
-
Kuhner, M. K., and J. Felsenstein. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11:459-468.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 459-468
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
12
-
-
0029917260
-
A stepwise algorithm for finding minimum evolution trees
-
Kumar, S. 1996. A stepwise algorithm for finding minimum evolution trees. Mol. Biol. Evol. 13:584-593.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 584-593
-
-
Kumar, S.1
-
13
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave, C., G. Preparata, C. Saccone, and G. Serio. 1984. A new method for calculating evolutionary substitution rates. J. Mol. Appl. Genet. 20:86-93.
-
(1984)
J. Mol. Appl. Genet.
, vol.20
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
14
-
-
0001884732
-
Relative efficiencies of different tree-making methods for molecular data
-
M. M. Miyamoto and J. Cracraft, eds. Oxford University Press, Oxford
-
Nei, M. 1991. Relative efficiencies of different tree-making methods for molecular data. Pp. 90-128 in M. M. Miyamoto and J. Cracraft, eds. Phylogenetic analysis of DNA sequences. Oxford University Press, Oxford.
-
(1991)
Phylogenetic Analysis of DNA Sequences
, pp. 90-128
-
-
Nei, M.1
-
15
-
-
0027957393
-
FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
-
Olsen, G. J., H. Matsuda, R. Hagstrom, and R. Overbeek. 1994. FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10:41-48.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 41-48
-
-
Olsen, G.J.1
Matsuda, H.2
Hagstrom, R.3
Overbeek, R.4
-
16
-
-
0033857959
-
NJML: A hybrid algorithm for the neighbor-joining and maximum-likelihood methods
-
Ota, S., and W. H. Li. 2000. NJML: A hybrid algorithm for the neighbor-joining and maximum-likelihood methods. Mol. Biol. Evol. 17:1401-1409.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1401-1409
-
-
Ota, S.1
Li, W.H.2
-
17
-
-
0003474751
-
-
Cambridge University Press, Cambridge, U.K.
-
Press, W. H., B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling. 1988. Numerical Recipes in C: The Art of Scientific Computing. Cambridge University Press, Cambridge, U.K.
-
(1988)
Numerical Recipes in C: The Art of Scientific Computing
-
-
Press, W.H.1
Flannery, B.P.2
Teukolsky, S.A.3
Vetterling, W.T.4
-
18
-
-
0030928378
-
Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
Rambaut, A., and N. C. Grassly. 1997. Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
19
-
-
0034983479
-
Quartet-based phylogenetic inference: Improvements and limits
-
Ranwez, V., and O. Gascuel. 2001. Quartet-based phylogenetic inference: Improvements and limits. Mol. Biol. Evol. 18:1103-1116.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1103-1116
-
-
Ranwez, V.1
Gascuel, O.2
-
20
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson, D. F., and L. R. Foulds. 1981. Comparison of phylogenetic trees. Math. Biosci. 53:131-147.
-
(1981)
Math. Biosci.
, vol.53
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
21
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
22
-
-
0000491446
-
Additive similarity trees
-
Sattah, S., and A. Tversky. 1977. Additive similarity trees. Psychometrika 42:319-345.
-
(1977)
Psychometrika
, vol.42
, pp. 319-345
-
-
Sattah, S.1
Tversky, A.2
-
23
-
-
0029836454
-
Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
-
Strimmer, K., and A. Von Haeseler. 1996. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haeseler, A.2
-
24
-
-
0024114801
-
A note on the neighbor-joining algorithm of Saitou and Nei
-
Studier, J. A., and K. J. Keppler. 1988. A note on the neighbor-joining algorithm of Saitou and Nei. Mol. Biol. Evol. 5:729-731.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 729-731
-
-
Studier, J.A.1
Keppler, K.J.2
-
25
-
-
0001336205
-
Phylogenetic inference
-
M. D. Hillis, C. Moritz, and B. K. Mable, eds. Sinauer Associates, Sunderland, Mass.
-
Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference. Pp. 407-509 in M. D. Hillis, C. Moritz, and B. K. Mable, eds. Molecular Systematics. Sinauer Associates, Sunderland, Mass.
-
(1996)
Molecular Systematics
, pp. 407-509
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
26
-
-
0027132974
-
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
Yang, Z. 1993. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
-
27
-
-
0028267146
-
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
-
Yang, Z., N. Goldman, and A. Friday. 1994. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Mol. Biol. Evol. 11:316-324.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 316-324
-
-
Yang, Z.1
Goldman, N.2
Friday, A.3
-
28
-
-
0001778604
-
A mathematical theory of evolution, based on the conclusions of Dr. J. C. Willis
-
Yule, G. 1925. A mathematical theory of evolution, based on the conclusions of Dr. J. C. Willis. Philos. Trans. R. Soc. Lond. B Biol. Sci. 213:21-87.
-
(1925)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.213
, pp. 21-87
-
-
Yule, G.1
|