An analysis of the sequence requirements of EDEN-BP for specific RNA binding

Nucleic Acids Research

Volumn 30, Issue 21, 2002, Pages 4667-4674

  Bonnet Corven, Sylvie ^a   Audic, Yann ^a   Omilli, Francis ^a   Osborne, H Beverley ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

EMBRYO DEADENYLATION ELEMENT BINDING PROTEIN; MESSENGER RNA; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DIMERIZATION; EMBRYO DEVELOPMENT; GENE REPRESSION; MOLECULAR RECOGNITION; MOLECULAR SIZE; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN RNA BINDING; PROTEIN STRUCTURE; RNA BINDING; RNA SEQUENCE; RNA TRANSLATION; TWO HYBRID SYSTEM; XENOPUS LAEVIS;

ANIMALIA; XENOPUS LAEVIS;

EID: 0036850732     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf586     Document Type: Article

References (46)

1. Stebbins-Boaz, B. and Richter, J.D. (1997) Translational control during early development. Crit. Rev. Eukaryot. Gene Expr., 7, 73-94.
2. Fox, C.A., Sheets, M.D. and Wickens, M. (1989) Poly(A) addition during maturation of frog oocytes: distinct nuclear and cytoplasmic activities and regulation by the sequence UUUUUAU. Genes Dev., 3, 2151-2162.
3. McGrew, L.L., Dworkin-Rastl, E., Dworkin, M.B. and Richter, J.D. (1989) Poly(A) elongation during Xenopus oocyte maturation is required for translational recruitment and is mediated by a short sequence element. Genes Dev., 3, 803-815.
4. Huarte, J., Stutz, A., O'Connel, M.L., Gubler, P., Belin, D., Darrow, A.L., Strickland, S. and Vassali, J.-D. (1992) Transient translational silencing by reversible mRNA deadenylation. Cell, 69, 1021-1030.
5. Wu, L., Wells, D., Tay, J., Mendis, D., Abbott, M., Barnitt, A., Quinlan, E., Heynen, A., Fallon, J. and Richter, J. (1998) CPEB-mediated cytoplasmic polyadenylation and the regulation of experience-dependent translation of alpha-CaMKII mRNA at synapses. Neuron, 5, 1129-1139.
6. Wells, D.G., Dong, X., Quinlan, E.M., Huang, Y.S., Bear, M.F., Richter, J.D. and Fallon, J.R. (2001) A role for the cytoplasmic polyadenylation element in NMDA receptor-regulated mRNA translation in neurons. J. Neurosci., 21, 9541-9548.
7. Wilson, T. and Treisman, R. (1988) Removal of poly(A) and consequent degradation of c-fos mRNA facilitated by 3′ AU-rich sequences. Nature, 336, 396-399.
8. Wilusz, C.J., Wormington, M. and Peltz, S.W. (2001) The cap-to-tail guide to mRNA turnover. Nature Rev. Mol. Cell Biol., 2, 237-246.
9. Voeltz, G., Ongkasuwan, J., Standart, N. and Steitz, J. (2001) A novel embryonic poly(A) binding protein, ePAB, regulates mRNA deadenylation in Xenopus egg extracts. Genes Dev., 15, 774-788.
10. Voeltz, G.K. and Steitz, J.A. (1998) AUUUA sequences direct mRNA deadenylation uncoupled from decay during Xenopus early development. Mol. Cell. Biol., 18, 7537-7545.
11. Bouvet, P., Omilli, F., Arlot-Bonnemains, Y., Legagneux, V., Roghi, C., Bassez, T. and Osborne, H.B. (1994) The deadenylation conferred by the 3′ untranslated region of a developmentally controlled mRNA in Xenopus embryos is switched to polyadenylation by deletion of a short sequence element. Mol. Cell. Biol., 14, 1893-1900.
12. Paillard, L., Omilli, F., Legagneux, V., Bassez, T., Maniey, D. and Osborne, H.B. (1998) EDEN and EDEN-BP, a cis element and an associated factor that mediates sequence-specific mRNA deadenylation in Xenopus embryos. EMBO J., 17, 278-287.
13. Paillard, L., Legagneux, V., Maniey, D. and Osborne, H. (2002) c-jun ARE targets mRNA deadenylation by an EDEN-BP (Embryo deadenylation element binding protein) dependent pathway. J. Biol. Chem., 277, 3232-3235.
14. Ezzeddine, N., Paillard, L., Capri, M., Maniey, D., Bassez, T., Aït-Ahmed, O. and Osborne, B. (2002) EDEN dependent translational repression of maternal mRNAs is conserved between Xenopus and Drosophila. Proc. Natl Acad. Sci. USA, 99, 257-262.
15. Legagneux, V., Bouvet, P., Omilli, F., Chevalier, S. and Osborne, H.B. (1992) Identification of RNA-binding proteins specific to Xenopus Eg maternal mRNAs: association with the portion of Eg2 mRNA that promotes deadenylation in embryos. Development, 116, 1193-1202.
16. Birney, E., Kumar, S. and Krainer, A.R. (1993) Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res., 21, 5803-5816.
17. Kenan, D.J., Query, C.C. and Keene, J.D. (1991) RNA recognition: towards indentifying determinants of specificity. Trends Biochem. Sci., 16, 214-220.
18. Burd, C.G. and Dreyfuss, G. (1994) Conserved structures and diversity of functions of RNA-binding proteins. Science, 265, 615-621.
19. Merrill, B.M., Stone, K.L., Cobianchi, F., Wilson, S.H. and Williams, K.R. (1988) Phenylalanines that are conserved among several RNA-binding proteins form part of a nucleic acid-binding pocket in the A1 heterogeneous nuclear ribonucleoprotein. J. Biol. Chem., 263, 3307-3313.
20. Nagai, K., Oubridge, C., Ito, N., Avis, J. and Evans, P. (1995) The RNP domain: a sequence specific RNA-binding domain involved in processing and transport of RNA. Trends Biochem. Sci., 20, 235-240.
21. Draper, D.E. (1999) Themes in RNA-protein recognition. J. Mol. Biol., 293, 255-270.
22. Good, P., Chen, O., Warner, S. and Herring, D. (2000) A family of human RNA-binding proteins related to the Drosophila Bruno translational regulator. J. Biol. Chem., 275, 28583-28592.
23. Murray, A.W. and Kirschner, M.W. (1989) Cyclin synthesis drives the early embryonic cell cycle. Nature, 339, 275-280.
24. Kohli, V. and Temsamani, J. (1993) Comparison of in vitro transcriptions using various types of DNA templates. Anal. Biochem., 208, 223-227.
25. SenGupta, D., Zhang, B., Kraemer, B., Pochart, P., Fields, S. and Wickens, M. (1996) A three-hybrid system to detect RNA-protein interactions in vivo. Proc. Natl Acad. Sci. USA, 93, 8496-8501.
26. Feilotter, H.E., Hannon, G.J., Ruddell, C.J. and Beach, D. (1994) Construction of an improved host strain for two hybrid screening. Nucleic Acids Res., 22, 1502-1503.
27. Audic, Y., Omilli, F. and Osborne, H.B. (1998) Embryo deadenylation element-dependent deadenylation is enhanced by a cis element containing AUU repeats. Mol. Cell. Biol., 18, 6879-6884.
28. Handa, N., Nureki, O., Kurimoto, K., Kim, I., Sakamoto, H., Shimura, Y., Muto, Y. and Yokoyama, S. (1999) Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein. Nature, 398, 579-585.
29. Wang, X. and Tanaka Hall, T.M. (2001) Structural basis for recognition of AU-rich element RNA by the HuD protein. Nature Struct. Biol., 8, 141-145.
30. Chung, S., Jiang, L., Cheng, S. and Furneaux, H. (1996) Purification and properties of HuD, a neuronal RNA-binding protein. J. Biol. Chem., 271, 11518-11524.
31. Abe, R., Sakashita, E., Yamamoto, K. and Sakamoto, H. (1996) Two different RNA binding activities for the AU-rich element and the poly(A) sequence of the mouse neuronal protein mHuC. Nucleic Acids Res., 24, 4895-4901.
32. Sakai, K., Kitagawa, Y. and Hirose, G. (1999) Analysis of the RNA recognition motifs of human neuronal ELAV-like proteins in binding to a cytokine mRNA. Biochem. Biophys. Res. Commun., 256, 263-268.
33. Park, S., Myszka, D.G., Yu, M., Littler, S.J. and Laird-Offringa, I.A. (2000) HuD RNA recognition motifs play distinct roles in the formation of a stable complex with AU-rich RNA. Mol. Cell. Biol., 20, 4765-4772.
34. Webster, P.J., Liang, L., Berg, C.A., Lasko, P. and Macdonald, P.M. (1997) Translational repressor bruno plays mutilple roles in development and is widely conserved. Genes Dev., 11, 2510-2521.
35. Timchenko, N.A., Welm, A.L., Lu, X. and Timchenko, L.T. (1999) CUG repeat binding protein (CUGBP1) interacts with the 5′ region of C/EBPβ mRNA and regulates translation of C/EBPβ isoforms. Nucleic Acids Res., 27, 4517-4525.
36. Takahashi, N., Sasagawa, N., Suzuki, K. and Ishiura, S. (2000) The CUG-binding protein binds specifically to UG dinucleotide repeats in a yeast three-hybrid system. Biochem. Biophys. Res. Commun., 277, 518-523.
37. Suzuki, H., Jin, Y., Otani, H., Yasuda, K. and Inoue, K. (2002) Regulation of alternative splicing of α-actinin transcript by Bruno-like proteins. Genes Cells, 7, 133-141.
38. Timchenko, L.T., Miller, J.W., Timchenko, N.A., DeVore, D.R., Datar, K.V., Lin, L., Roberts, R., Caskey, C.T. and Swanson, M.S. (1996) Identification of a (CUG)n triplet repeat RNA-binding protien and its expression in myotonic dystrophy. Nucleic Acids Res., 24, 4407-4414.
39. Suzuki, H., Maegawa, S., Nishibu, T., Sugiyama, T., Yasuda, K. and Inoue, K. (2000) Vegetal localization of the maternal mRNA encoding an EDEN-BP/Bruno-like protein in zebrafish. Mech. Dev., 93, 205-209.
40. Timchenko, N.A., Iakova, P., Cai, Z.J., Smith, J.R. and Timchenko, L.T. (2001) Molecular basis for impaired muscle differentiation in myotonic dystrophy. Mol. Cell. Biol., 21, 6927-6938.
41. Philips, A.V., Timchenko, L.T. and Cooper, T.A. (1998) Disruption of splicing regulated by a CUG-binding protein in myotonic dystrophy. Science, 280, 737-741.
42. Poleev, A., Hartmann, A. and Stamm, S. (2000) A trans-acting factor, isolated by the three-hybrid system, that influences alternative splicing of the amyloid precursor protein minigene. Eur. J. Biochem., 267, 4002-4010.
43. Ladd, A.N., Charlet, N. and Cooper, T. (2001) The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing. Mol. Cell. Biol., 21, 1285-1296.
44. Kim-Ha, J., Kerr, K. and Macdonald, P.M. (1995) Translational regulation of oskar mRNA by Bruno, an ovarian RNA-binding protein is essential. Cell, 81, 403-412.
45. Roberts, R., Timchenko, N., Miller, J., Reddy, S., Caskey, C., Swanson, M. and Timchenko, L. (1997) Altered phosphorylation and intracellular distribution of a (CUG)n triplet repeat RNA-binding protein in patients with myotonic dystrophy and in myotonin protein kinase knockout mice. Proc. Natl Acad. Sci. USA, 94, 13221-13226.
46. Klein Gunnewiek, J.M., Hussein, R.I., van Aarssen, Y., Palacios, D., de Jong, R., van Venrooij, W.J. and Gunderson, S.I. (2000) Fourteen residues of the U1 snRNP-specific U1A protein are required for homodimerization, cooperative RNA binding and inhibition of polyadenylation. Mol. Cell. Biol., 20, 2209-2217.