Targeting of tRNA into yeast and human mitochondria: The role of anticodon nucleotides

Mitochondrion

Volumn 2, Issue 1-2, 2002, Pages 95-107

  Kolesnikova, O ^a,b   Entelis, N ^a   Kazakova, H ^a,b   Brandina, I ^a,b   Martin, R P ^a   Tarassov, I ^a  

^a UNIVERSITÉ DE STRASBOURG   (France)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

Aminoacylation; Human mitochondria; Saccharomyces cerevisiae; tRNA mitochondrial import

Indexed keywords

LYSINE TRANSFER RNA LIGASE; NUCLEIC ACID BASE; TRANSFER RNA; URACIL;

AMINOACYLATION; ANTICODON; ARTICLE; CELL TRANSPORT; CONTROLLED STUDY; ENZYME BINDING; GENE MUTATION; GENE TARGETING; HUMAN; HUMAN CELL; IN VIVO STUDY; ISOLATION PROCEDURE; MITOCHONDRION; MOLECULAR RECOGNITION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PRIORITY JOURNAL; PROTEIN INTERACTION; RNA SEQUENCE; RNA TRANSPORT; YEAST CELL;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 0036838360     PISSN: 15677249     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1567-7249(02)00013-2     Document Type: Article

References (36)

1. Aphasizhev, R., Senger, B., Fasiolo, F., 1997. Importance of structural features for tRNA(Met) identity. RNA 3, 489-497.
2. Cavarelli, J., Rees, B., Ruff, M., Thierry, J.C., Moras, D., 1993. Yeast tRNA(Asp) recognition by its cognate class II amino-acyl-tRNA synthestase. Nature 362, 181-184.
3. Commans, S., Lazard, M., Delort, F., Blanquet, S., Plateau, P., 1998. tRNA anticodon recognition and specification within subclass IIb aminoacyl-tRNA synthetases. J. Mol. Biol. 278, 801-813.
4. Cusack, S., Yaremchuk, A., Tukalo, M., 1996. The crystal structures of T. thermophilus lysyl-tRNA synthetase complexed with E. coli tRNA(Lys) and a T. thermophilus tRNA(Lys) transcript: anticodon recognition and conformational changes upon binding of a lysyl-adenylate analogue. EMBO J. 15, 6321-6334.
5. Entelis, N.S., Krasheninnikov, I.A., Martin, R.P., Tarassov, I.A., 1996. Mitochondrial import of a yeast cytoplasmic tRNA (Lys): possible roles of aminoacylation and modified nucleosides in subcellular partitioning. FEBS Lett. 384, 38-42.
6. Entelis, N.S., Kieffer, S., Kolesnikova, O.A., Martin, R.P., Tarassov, I.A., 1998. Structural requirements of tRNALys for its import into yeast mitochondria. Proc. Natl. Acad. Sci. USA 95, 2838-2843.
7. Entelis, N.S., Kolesnikova, O.A., Dogan, S., Martin, R.P., Tarassov, I.A., 2001a. 5 S tRNA and tRNA Import into Human Mitochondria. Comparison of in vitro requirements. J. Biol. Chem. 276, 45642-45653.
8. Entelis, N.S., Kolesnikova, O.A., Martin, R.P., Tarassov, I.A., 2001b. RNA delivery into mitochondria. Adv. Drug. Deliv. Rev. 49, 199-215.
9. Flierl, A., Reichmann, H., Seibel, P., 1997. Pathophysiology of the MELAS 3243 transition mutation. J. Biol. Chem. 272, 27189-27196.
10. Freist, W., Gauss, D.H., 1995. Lysyl-tRNA synthetase. Biol. Chem. Hoppe Seyler 376, 451-472.
11. Giege, R., Puglisi, J.D., Florentz, C., 1993. tRNA structure and aminoacylation efficiency. Prog. Nucleic Acids Res. Mol. Biol. 45, 129-206.
12. Hao, H., Moraes, C.T., 1997. A disease-association G5703A mutation in human mitochondrial DNA causes a conformational change and a marked decrease in steady-state levels of mitochondrial tRNA(Asn). Mol. Cell. Biol. 17, 6831-6837.
13. Heitzler, J., Marechal-Drouard, L., Dirheimer, G., Keith, G., 1992. Use of a dot blot hybridization method for identification of pure tRNA species on different membranes. Biochim. Biophys. Acta 1129, 273-277.
14. Hou, Y.M., Schimmel, P., 1988. A simple structural feature is a major determinant of the identity of a transfer RNA. Nature 333, 140-145.
15. Kazakova, H.A., Entelis, N.S., Martin, R.P., Tarassov, I.A., 1999. The aminoacceptor stem of the yeast tRNA(Lys) contains determinants of mitochondrial import selectivity. FEBS Lett. 442, 193-197.
16. Kern, D., Dietrich, A., Fasiolo, F., Renaud, M., Giege, R., Ebel, J.P., 1977. The yeast aminoacyl-tRNA synthetases. Methodology for their complete or partial purification and comparison of their relative activities under various extraction conditions. Biochimie 59, 453-462.
17. Kolesnikova, O.A., Entelis, N.S., Mireau, H., Fox, T.D., Martin, R.P., Tarassov, I.A., 2000. Suppression of mutations in mitochondrial DNA by tRNAs imported from the cytoplasm. Science 289, 1931-1933.
18. Kunkel, T.A., Roberts, J.D., Zakour, R.A., 1987. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 154, 367-382.
19. Magalhaes, P.J., Andreu, A.L., Schon, E.A., 1998. Evidence for the presence of 5S rRNA in mammalian mitochondria. Mol. Biol. Cell 9, 2375-2382.
20. Maniatis, T., Fritsch, E.F., Sambrook, J., 1982. Molecular Cloning: a Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
21. Martin, R.P., Schneller, J.M., Stahl, A.J., Dirheimer, G., 1979. Import of nuclear deoxyribonucleic acid coded lysine-accepting transfer ribonucleic acid (anticodon C-U-U) into yeast mitochondria. Biochemistry 18, 4600-4605.
22. McClain, W.H., Foss, K., Jenkins, R.A., Schneider, J., 1990. Nucleotides that determine Escherichia coli tRNA(Arg) and tRNA(Lys) acceptor identities revealed by analyses of mutant opal and amber suppressor tRNAs. Proc. Natl. Acad. Sci. USA 87, 9260-9264.
23. Moraes, C.T., Sciacco, M., Ricci, E., et al., 1995. Phenotype-genotype correlations in skeletal muscle of patients with mtDNA deletions. Muscle Nerve 3, S150-S153.
24. Puranam, R.S., Attardi, G., 2001. The RNase P associated with HeLa cell mitochondria contains an essential RNA component identical in sequence to that of the nuclear RNase P. Mol. Cell. Biol. 21, 548-561.
25. Schneider, A., Marechal-Drouard, L., 2000. Mitochondrial tRNA import: are there distinct mechanisms? Trends Cell Biol. 10, 509-513.
26. Shiba, K., Stello, T., Motegi, H., Noda, T., Musier-Forsyth, K., Schimmel, P., 1997. Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant. J. Biol. Chem. 272, 22809-22816.
27. Smith, C.J., Ley, A.N., D'Obrenan, P., Mitra, S.K., 1971. The structure and coding specificity of a lysine transfer ribonucleic acid from the haploid yeast Saccharomyces cerevisiae alpha S288C. J. Biol. Chem. 246, 7817-7819.
28. Tamura, K., Himeno, H., Asahara, H., Hasegawa, T., Shimizu, M., 1992. In vitro study of E. coli tRNA(Arg) and tRNA(Lys) identity elements. Nucleic Acids Res. 20, 2335-2339.
29. Tarassov, I., Entelis, N., Martin, R.P., 1995a. An intact protein translocatin machinery is required for mitochondrial import of a yeast cytoplasmic tRNA. J. Mol. Biol. 245, 315-323.
30. Tarassov, I., Entelis, N., Martin, R.P., 1995b. Mitochondrial import of a cytoplasmic lysine-tRNA in yeast is mediated by cooperation of cytoplasmic and mitochondrial lysyl-tRNA synthetases. EMBO J. 14, 3461-3471.
31. Varshney, U., Lee, C.P., RajBhandary, U.L., 1991. Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase. J. Biol. Chem. 266, 24712-24718.
32. Wallace, D.C., 1999. Mitochondrial diseases in man and mouse. Science 283, 1482-1488.
33. Wallace, D.C., 2001. A mitochondrial paradigm for degenerative diseases and ageing. Novartis Found. Symp. 235, 247-263.
34. Yarus, M., 1982. Translational efficiency of transfer RNA's: uses of an extended anticodon. Science 218, 646-652.
35. Yasukawa, T., Suzuki, T., Ishii, N., Ueda, T., Ohta, S., Watanabe, K., 2000. Defect in modification at the anticodon wobble nucleotide of mitochondrial tRNA(Lys) with the MERRF encephalomyopathy pathogenic mutation. FEBS Lett. 467, 175-178.
36. Yoshionari, S., Koike, T., Yokogawa, T., et al., 1994. Existence of nuclear-encoded 5S-rRNA in bovine mitochondria. FEBS Lett. 338, 137-142.