Proteomics: Capacity versus utility

Electrophoresis

Volumn 21, Issue 6, 2000, Pages 1071-1081

  Harry, Jenny L ^a   Wilkins, Marc R ^a   Herbert, Ben R ^a   Packer, Nicolle H ^a   Gooley, Andrew A ^a   Williams, Keith L ^a  

^a Proteome Systems Ltd   (Australia)

Author keywords

Automation; Function; Mass spectrometry; Protein delivery; Proteoinformatics; Proteomics; Review; Two dimensional polyacrylamide gel electrophoresis

Indexed keywords

ELECTROPHORESIS; GENES; MOLECULAR BIOLOGY; NUCLEIC ACIDS; PROTEINS; THROUGHPUT;

GENOMICS; HIGH-THROUGHPUT METHOD; LARGE AMOUNTS; PROTEIN DELIVERY; PROTEOINFORMATIC; PROTEOMIC APPROACHES; PROTEOMICS; SEQUENCE DATA; SIMPLE++; TWO-DIMENSIONAL POLYACRYLAMIDE GEL ELECTROPHORESIS;

MASS SPECTROMETRY;

AUTOMATION; GENE THERAPY; INFORMATION SCIENCE; MASS SPECTROMETRY; PROTEIN ANALYSIS; PROTEIN DETERMINATION; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEIN TARGETING; REVIEW; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 0034097324     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1522-2683(20000401)21:6<1071::AID-ELPS1071>3.0.CO;2-M     Document Type: Review

References (79)

1. Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bull, C. J., Tomb, J. F., Dougherty, B. A., Merrick, J. M., Science 1995,269, 496-512.
2. Dunham, I., Shimizu, N., Roe, B. A., Chissoe, S., Hunt, A. R., Collins, J. E., Bruskiewich, R., Beare, D. M., Clamp, M., Smink, L J., Ainscough, R., Almeida, J. P., Babbage, A., Bagguley, C., Bailey, J., Barlow, K., Bates, K. N., Beasley, O., Bird, C. P., Blakey, S., Bridgeman, A. M., Bück, D., Burgess, J., Burrill, W. D., O'Brien, K. P., Nature 1999, 402, 489-495.
3. Lin, X., Kaul, S., Rounsley, S., Shea, T. P., Benito, M. l., Town, C. D., Fujii, C. Y., Mason, T., Bowman, C. L, Barnstead, M., Feldblyum, T. V., Buell, C. R., Ketchum, K. A., Lee, J., Ronning, C. M., Koo, H. L, Moffat, K. S., Cronin, L A., Shen, M., Pai, G., Van Aken, S., Umayam, L., Talion, L J., Gill, J. E., Adams, M. D., Carrera, A. J., Creasy, T. H., Goodman, H. M., Somerville, C. R., Copenhaver, G. P., Preuss, D., Nierman, W. C., White, O., Eisen, J. A., Salzberg, S. L, Fraser, C. M., Venter, J. C., Nature 1999, 402, 761-768.
4. Butler, D., Nature 1999, 401, 729-730.
5. Debouck, C., Goodfellow, P. N., Nature Genet. 1999, 21, 48-50.
6. Abbott, A., Nature 1999, 402, 715-720.
7. Celis, J. E., Gromov, P., Curr. Opin. Biotechnol. 1999, 10, 16-21.
8. Klose, J., Humangenetik 1975, 26, 231-243.
9. O'Farrell, P. H., J. Biol. Chem. 1975,25, 4007-4021.
10. Rabilloud, T., Adessi, C., Giraudel, A., Lunardi, J., Electrophoresis 1997, 70,307-316.
11. Herbert, B. R., Molloy, M. P., Walsh, B. J., Gooley, A. A., Bryson, W. G., Williams, K. L., Electrophoresis 1998, 19, 845-851.
12. Chevallet, M., Santoni, V., Poinas, A., Rouquie, D., Fuchs, A., Kieffer, S., Rossignol, M., Lunardi, J., Garin, J., Rabilloud, T., Electrophoresis 1998, 19,1901-1909.
13. Urquhart, B. L, Atsalos, T. E., Roach, D., Basseal, D. J., Bjellqvist, B., Britton, W. L., Humphery-Smith, l., Electrophoresis 1997, 73,1384-1392.
14. Wasinger, V. C Bjellqvist, B., Humphery-Smith, l., Electrophoresis 1997, 18, 1373-1383.
15. Görg, A., Obermaier, C., Boguth, G., Csordas, A., Diaz, J. J., Madjar, J. J., Electrophoresis 1997, 18, 328-337.
16. Molloy, M. P., Herbert, B. R., Walsh, B. J., Tyler, M. l., Traini, M., Sanchez, J.-C., Hochstrasser, D. F., Williams, K. L., Gooley, A. A., Electrophoresis 1998,837-844.
17. Bjellqvist, B., Sanchez, J.-C., Pasquali, C., Ravier, F., Paquet, N., Frutiger, S., Hughes, G. J., Hochstrasser, D. F., Electrophoresis 1993, 14,1375-1378.
18. Sanchez, J.-C., Rouge, V., Pisteur, M., Ravier, F., Tonella, L, Moosmayer, M., Wilkins, M. R., Hochstrasser, D. F., Electrophoresis 1997, 18,324-327.
19. Molloy, M. P., Herbert, B. R., Williams, K. L, Gooley, A. A., Electrophoresis 1999, 20, 701-704.
20. Santoni, V., Rabilloud, T., Doumas, P., Rouquie, D., Mansion, M., Kieffer, S., Garin, J., Rossignol, M., Electrophoresis 1999,20, 705-711.
21. Righetti, P. G., Bossi, A., Görg, A., Obermaier, C., Boguth, G., J. Biochem. Biophys. Methods 1996, 31, 81-91.
22. Görg, A., Obermaier, C., Boguth, G., Weiss, W., Electrophoresis 1999, 20, 712-717.
23. Schagger, H., von Jagow, G., Anal. Biochem. 1987, 166, 368-379.
24. Küster, B., Mann, M., Curr. Opin. Struct. Biol. 1998, 8, 393-400.
25. Patterson, S. D., Aebersold, R., Electrophoresis 1995, 16, 1791-1814.
26. Yates III, J. R., J. Mass Spectrom. 1998, 33,1-19.
27. James, P., O. Rev. Biophys. 1997, 30, 279-331.
28. Neubauer, G., King, A., Rappsilber, J., Calvio, C., Watson, M., Ajuh, P., Sleeman, J., Lamond, A., Mann, M., Nature Genet. 1998, 20,46-50.
29. McCormack, A. L., Schieltz, D. M., Goode, B., Yang, S., Barnes, G., Drubin, D., Yates III, J. R., Anal. Chem. 1997, 69, 767-776.
30. Mintz, P. J., Patterson, S. D., Neuwald, A. F., Spahr, C. S., Spector, D. L., EMBOJ. 1999, 18,4308-4320.
31. Chaurand, P., Luetzenkirchen, F., Spengler, B., J. Am. Soc. Mass Spectrom. 1999, 10, 91-103.
32. Shen, T. L, Huang, 2. H., Laivenieks, M., Zeikus, J. G., Gage, D. A., Allison, J., J. Mass Spectrom. 1999, 34, 1154-1165.
33. Keough, T., Youngquist, R. S., Lacey, M. P., PNAS 1999, 96,7131-7136.
34. Henzel, W. J., Tropea, J., Dupont, D., Anal. Biochem. 1999, 267,148-160.
35. Jungblut, P. R., Zimny-Arndt, U., Zeindl-Eberhart, E., Stulik, J., Koupilova, K., Pleissner, K. P., Otto, A., Müller, E. C., Sokolowska-Kohler, W., Grabher, G., Stoffler, G., Electrophoresis 1999, 20, 2100-2110.
36. Quadroni, M., James, P., Electrophoresis 1999, 20, 664-677.
37. Gooley, A., Williams, K., Packer, N., Analysis of Molecules, International application published under the patent cooperation treaty WO9847006, 1998.
38. Bienvenut, W. V., Sanchez, J.-C., Karmime, A., Rouge, V., Rose, K., Binz, P. A., Hochstrasser, D. F., Anal. Chem. 1999,77,4800-4807.
39. Binz, P. A., Müller, M., Walther, D., Bienvenut, W. V., Gras, R., Hoogland, C., Bouchet, G., Gasteiger, E., Fabbretti, R., Gay, S., Palagi, P., Wilkins, M. R., Rouge, V., Tonella, L, Paesano, S., Rossellat, G., Karmime, A., Bairoch, A., Sanchez, J.-C., Appel, R. D., Hochstrasser, D. F., Anal. Chem. 1999, 77,4981-4988.
40. Anderson, N. L., Taylor, J., Sacandora, A. E., Coulter, B. P., Anderson, N. G., Clin. Chem. 1981, 27,1807-1820.
41. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., Lipman, D. J., J. Mol. Biol. 1990,275, 403-410.
42. Pearson, W. R., Lipman, D. J., Proc. Natl. Acad. Sci. USA 1988,85,2444-2448.
43. Wilkins, M. R., Gasteiger, E., Tonella, L, Ou, K., Tyler, M., Sanchez, J.-C., Gooley, A. A., Walsh, B. J., Bairoch, A., Appel, R. D., Williams, K. L., Hochstrasser, D. F., J. Mol. Biol. 1998,278, 599-608.
44. Yates III, J. R., Eng, J. K., McCormack, A. L, Anal. Chem. 1995,67,3202-3210.
45. Mann, M., in: Keller, R., Lottspeich, F., Meyer, H. E. (Eds.), Microcharacterisation of Proteins, VCH, Weinheim 1994, pp. 223-245.
46. Clauser, K. R., Baker, P., Burlingame, A. L., Anal. Chem. 1999,77,2871-2882.
47. Boguski, M. S., Löwe, T. M., Tolstoshev, C. M., Nature Genet. 1993, 4,332-333.
48. Cavdar Koc, E., Blackburn, K., Burkhart, W., Spremulli, L. L., Biochem. Biophys. Res. Commun. 1999, 266, 141-146.
49. Schrotz-King, P., Wilm, M., Andersen, J. S., Ashman, K., Podtelejnikov, A. V., Bachi, A., King, A., Mann, M., Recept. Signal Transduct Res. 1999, 19, 659-672.
50. Alberts, B., Cell 1998, 92,291-294.
51. Chien, C. T., Bartel, P. L, Sternglanz, R., Fields, S., Proc. Natl. Acad.Sci. USA 1991, 88, 9578-9582.
52. Marcotte, E. M., Pellegrini, M., Thompson, M. J., Yeates, T. O., Eisenberg, D., Nature 1999, 402, 83-66.
53. Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M., Seraphin, B., NatureBiotechnol. 1999, 77,1030-1032.
54. Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M., Aebersold, R., Nature Biotechnol. 1999, 77, 994-999.
55. Wilkins, M. R., Pasquali, C., Appel, R. D., Ou, K., Golaz, O., Sanchez, J.-C., Yan, J. X., Gooley, A. A., Hughes, G., Humphery-Smith, L, Williams, K. L, Hochstrasser, D. F., Biotechnology 1996, 74,61-65.
56. Langen, H., Gray, C., Roder, D., Juranville, J. F., Takacs, B., Fountoulakis, M., Electrophoresis 199.7, 18,1184-1192.
57. Gooley, A. A., Packer, N. H., in: Wilkins, M. R., Williams, K. L., Appel, R. D., Hochstrasser, D. F. (Eds.), Proteome Research: New Frontiers in Functional Genomics, Springer, Berlin 1997, pp. 65-86.
58. Cossu, G., Righetti, P. G., J. Chromatogr. 1987, 398, 211-216.
59. Ducret, A., Bruun, C. F., Bures, E. J., Marhaug, G., Husby, G., Aebersold, R., Electrophoresis 1996, 77, 866-876.
60. Wilkins, M. R., Gasteiger, E., Gooley, A. A., Herbert, B. R., Molloy, M. P., Binz, P. A., Ou, K., Sanchez, J.-C., Bairoch, A., Williams, K. L, Hochstrasser, D. F., J. Mol. Biol. 1999, 259, 645-657.
61. Cao, P., Stults, J. T., J. Chromatogr. A 1999, 853,225-235.
62. Figeys, D., Corthals, G. L, Gallis, B., Goodlett, D. R., Ducret, A., Corson, M. A., Aebersold, R., Anal. Chem. 1999, 71, 2279-2287.
63. Müller, D. R., Schindler, P., Goulot, M., Voshol, H., van Oostrum, J., J. Mass Spectrom. 1999, 34, 336-345.
64. Hart, G. W., Kreppel, L. K., Corner, F. l., Arnold, C. S., Snow, D. M., Ye, Z., Cheng, X., DellaManna, D., Caine, D. S., Earles, B. J., Akimoto, Y., Cole, R. N., Hayes, B. K., Glycobiology 1996, 6, 711-716.
65. Packer, N. H., Harrison, M. J., Electrphoresis 1998, 19, 1872-1882.
66. Brockhausen, l., Kuhns, W., in: Landes, R. G. (Ed.), Glycoproteins and Human Disease, R. G. Landes, New York 1997.
67. Cooper, C. A., Wilkins, M. R., Williams, K. L, Electrophoresis 1999,20, 3589-3598.
68. Hansen, J. E., Lund, O., Tolstrup, N., Gooley, A. A., Williams, K. L, Brunak, S., Glycoconj. J. 1998, 15,115-130.
69. Seppala, M., Koistinen, H., Koistinen, R., Mandelin, E., Oehninger, S., Clark, G. F., Dell, A., Morris, H. R., Hum. Reprod. 1998, Suppl. 3, 262-291.
70. Anderson, N. L., Anderson, N. G., Electrophoresis 1998, 19, 1853-1861.
71. Anderson, N. L., Esquer-Blasco, R., Hofmann, J. P., Anderson, N. G., Electrophoresis 1991, 12, 907-930.
72. Anderson, N. L., Esquer-Blasco, R., Hofmann, J. P., Meheus, L., Raymackers, J., Steiner, S., Witzmann, F., Anderson, N. G., Electrophoresis 1995, 16,1977-1981.
73. Anderson, N. L., Taylor, J., Hofmann, J. P., Esquer-Blasco, R., Swift, S., Anderson, N. G., Toxicol. Pathol. 1996, 24, 72-76.
74. Weinstein, J. N., Myers, T. G., O'Connor, P. M., Friend, S. H., Fornace Jr., A. J., Kohn, K. W., Fojo, T., Bates, S. E., Rubinstein, L. V., Anderson, N. L., Buolamwini, J. K., van Osdol, W. W., Monks, A. P., Scudiero, D. A., Sausville, E. A., Zaharevitz, D. W., Bunow, B., Viswanadhan, V. N., Johnson, G. S., Wittes, R. E., Paull, K. D., Science 1997, 275, 343-349.
75. Crystal, R. G., McElvaney, N. G., Rosenfeld, M. A., Chu, C. S., Mastrangeli, A., Hay, J. G., Brody, S. L, Jaffe, H. A., Eissa, N. T., Danel, C., Nature Genet. 1994, 8, 42-51.
76. Rondon, l. J., Marasco, W. A., Annu. Rev. Microbiol. 1997, 51, 257-283.
77. Hoffman, E. P., Arch. Pathol. Lab. Med. 1999, 123, 1050-1052.
78. Fawell, S., Seery, J., Daikh, Y., Moore, C., Chen, L. L, Pepinsky, B., Barsoum, J., Proc. Natl. Acad. sei. USA 1994, 91, 664-668.
79. Schwarze, J., Makela, M., Cielewicz, G., Dakhama, A., Lahn, M., Ikemura, T., Joetham, A., Gelfand, E. W., J. Immunol. 1999, 163, 5729-5734.