Early tertiary out-of-India dispersal of crypteroniaceae: Evidence from phylogeny and molecular dating

Evolution

Volumn 56, Issue 10, 2002, Pages 1931-1942

  Conti, Elena ^a   Eriksson, Torsten ^b   Schönenberger, Jürg ^a   Sytsma, Kenneth J ^c   Baum, David A ^c,d  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b ROYAL SWEDISH ACADEMY OF SCIENCES   (Sweden)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

^d HARVARD UNIVERSITY   (United States)

Author keywords

Biogeography; Gondwana; Lineage effects; Maximum likelihood; Molecular clock; Penalized likelihood; Vicariance

Indexed keywords

DISPERSAL; DIVERGENCE; MOLECULAR ANALYSIS; PHYLOGENY;

ALZATEACEAE; AXINANDRA; CRYPTERONIA; CRYPTERONIACEAE; DACTYLOCLADUS; EMBRYOPHYTA; OLINIACEAE; PENAEACEAE; RHYNCHOCALYCACEAE;

CHLOROPLAST DNA; RBCL PROTEIN, PLASTID; RIBULOSEBISPHOSPHATE CARBOXYLASE;

ARTICLE; EVOLUTION; GENETICS; GEOGRAPHY; INDIA; MOLECULAR EVOLUTION; PHYLOGENY; STATISTICAL MODEL; TIME; TREE;

DNA, CHLOROPLAST; EVOLUTION; EVOLUTION, MOLECULAR; GEOGRAPHY; INDIA; LIKELIHOOD FUNCTIONS; PHYLOGENY; RIBULOSE-BISPHOSPHATE CARBOXYLASE; TIME FACTORS; TREES;

EID: 0036807292     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2002.tb00119.x     Document Type: Article

References (99)

1. Albert, V. A, A. Backlund, K. Bremer, M. W. Chase, J. R. Manhart, B. D. Mishler, and K. C. Nixon. 1994. Functional constraints and rbcL evidence for land plant phylogeny. Ann. Mo. Bot. Gard. 81:534-567.
2. Anderson, J. A. R., and J. Muller. 1975. Palynological study of a holocene peat and a miocene coal deposit from NW Borneo. Rev. Paleobot. Palynol. 19:291-351.
3. Axelrod, D. I. 1971. Plate tectonics in relation to the history of angiosperm vegetation in India. Birbal Sahni Inst. Paleobot. Spec. Publ. 1:5-18.
4. Ashton, P. S., and C. V. S. Gunatilleke. 1987. New light on the plant geography of Ceylon 1. Historical plant geography. J. Biogeogr. 14:249-285.
5. Baillon, H. E. 1877. Monographie des Mélastomacées. Histoire des Plantes 7:1-65.
6. Bakhuizen van den Brink, Jr., R. C. 1947. A contribution to the knowledge of the Melastomataceae occurring in the Malay Archipelago, especially in the Netherlands East Indies. Meded. Bot. Mus. Herb. Rijks Univ. 91:1-391.
7. Bande, M. B. 1992. The Paleogene vegetation of peninsular India (megafossil evidence). Palaeobotanist 40:275-284.
8. Bande, M. B., and U. Prakash. 1986. The tertiary flora of Southeast Asia with remarks on its paleoenvironment and phytogeography of the Indo-Malayan region. Rev. Paleobot. Palynol. 49:203-233.
9. Baum, D. A., R. Small, and J. F. Wendel. 1998. Biogeography and floral evolution of baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets. Syst. Biol. 47:181-207.
10. Beck, R. A., D. W. Burbank, W. J. Sercombe, G. W Riley, J. K. Barndt, J. R. Berry, J. Afzal, A. M. Khan, H. Jurgen, J. Metje, A. Cheema, N. A. Shaflque, R. D. Lawrence, and A. Khan. 1995. Stratigraphic evidence for an early collision between northwest India and Asia. Nature 373:55-58.
11. Bentham, G., and J. D. Hooker. 1867. Genera Plantarum. Lovell Reeve, London.
12. Bossuyt, F., and M. C. Milinkovitch. 2001. Amphibians as indicators of early Tertiary "out-of-India" dispersal of Vertebrates. Science 292:93-95.
13. Chase, M. W., and V. A. Albert. 1998. A perspective on the contribution of plastid rbcL DNA sequences to angiosperm phylogenetics. Pp. 448-507 in D. E. Soltis, P. S. Soltis, and J. J. Doyle, eds. Molecular Systematics of Plants II: DNA Sequencing. Kluwer, Boston, MA.
14. Clausing, G., and S. S. Renner. 2001. Molecular phylogenetics of Melastomataceae and Memecylaceae: Implications for character evolution. Am. J. Bot. 88:486-498.
15. Cogniaux, C. A. 1891. Melastomataceae (Monographiae Phanerogamarum). Pp. 1-1256 in A. de Candolle and C. de Candolle, eds. Monographiae Phanerogamarum. Vol. 7. Maisson, Paris.
16. Conti, E., A. Fischbach, and K. J. Sytsma. 1993. Tribal relationships in Onagraceae: Implications from rbcL sequence data. Ann. Mo. Bot. Gard. 80:672-685.
17. Conti, E., A. Litt., and K. J. Sytsma. 1996. Circumscription of Myrtales and their relationships to other rosids: Evidence from rbcL sequence data. Am. J. Bot. 83:221-233.
18. Conti, E., S. A. Graham, A. Litt, P. G. Wilson, B. G. Briggs, L. A. S. Johnson, and K. J. Sytsma. 1997. Interfamilial relationships in Myrtales: Molecular phylogeny and patterns of morphological evolution. Syst. Bot. 22:629-647.
19. Cooper, A., C. Lalueza-Fox, S. Anderson, A. Rambaut, J. Austin, and R. Ward. 2001. Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution. Nature 409:704-707.
20. Dahlgren, R., and R. F. Thorne. 1984. The order Myrtales: Circumscription, variation, and relationships. Ann. Mo. Bot. Gard. 71:633-699.
21. Dahlgren, R., and A. E. van Wyk. 1988. Structures and relationships of families endemic to or centered in Southern Africa. Monograph. Syst. Bot. Mo. Bot. Gard. 25:1-94.
22. Dayanandan, S., P. S. Ashton, S. M. Williams, and R. B. Primack. 1999. Phylogeny of the tropical tree family Dipterocarpaceae based on nucleotide sequences of the chloroplast rbcL gene. Am. J. Bot. 86:1182-1190.
23. de Candolle, A. L. P. P. 1868. Crypteroniaceae. Pp. 677-679 in Prodromus Systematis Naturalis Regni Vegetabilis. Vol. 16. Victoris Masson, Paris.
24. Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
25. _. 1993. PHYLIP (Phylogeny Inference Package). Ver. 3.5c. Dept. of Genetics, Univ. of Washington, Seattle, WA.
26. Gaut, B. S. 1997. Molecular clock and nucleotide substitution rates in higher plants. Evol. Biol, 30:93-120.
27. Gaut, B. S., S. V. Muse, W. D. Clark, and M. T. Clegg. 1992. Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants. J. Mol. Evol. 35:292-303.
28. Gilg, E. 1897. Melastomataceae (Nachtrag). Pp. 263-268 in A. Engler and K. Prantl, eds. Die Natuerlichen Pflanzenfamilien. W. Engelmann, Leipzig.
29. Givnish, T. J, T. M. Evans, M. L. Zjhra, T. B. Patterson, P. E. Berry, and K. J. Sytsma. 2000. Molecular evolution, adaptive radiation, and geographic diversification in the amphiatlantic family Rapateaceae: Evidence from ndhF and morphology. Evolution 54:1915-1937.
30. Graham, S. A. 1984. Alzateaceae, a new family of Myrtales from the American tropics. Ann. Mo. Bot. Gard. 71:757-779.
31. Guleria, J. S. 1992. Neogene vegetation of peninsular India. Paleobotanist 40:285-311.
32. Hallier, H. 1911. Ueber Phanerogamen von unsicherer oder unrichtiger Stellung. Meded. Rijks Herb. 1910:1-40.
33. Hillis, D. M., B. K. Mable, and C. Moritz. 1996. Applications of molecular systematics: The state of the field and a look at the future. Pp. 515-543 in D. M. Hillis, C. Moritz, and B. K. Mable, eds. Molecular Systematics. Sinauer, Sunderland, MA.
34. Huelsenbeck, J. P., and B. Rannala. 1997. Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276:227-232.
35. Johnson, L. A. S., and B. G. Briggs. 1984. Myrtales and Myrtaceae - A phylogenetic analysis. Ann. Mo. Bot. Gard. 71:700-756.
36. Keating, R. C. 1984. Leaf histology and its contribution to relationships in the Myrtales. Ann. Mo. Bot. Gard. 71:801-823.
37. Krasser, F. 1893. Melastomataceae. Pp. 130-199 in A. Engler and K. Prantl, eds. Die Natuerlichen Pflanzenfamilien III(7). W. Engelmann, Leipzig.
38. Krause, D. W., and M. C. Maas. 1990. The biogeographic origins of the late Paleocene-early Eocene mammalian immigrants to the western interior of North America. Pp. 71-105 in T. M. Bown and K. D. Rose, eds. Dawn of the age of mammals in the northern part of the Rocky Mountain interior, North America. Geol. Soc. Am. Spec. Pap. 243.
39. Langley, C. H., and W. Fitch. 1974. An estimation of the constancy of the rate of molecular evolution. J. Mol. Evol. 3:161-177.
40. Lourteig, A. 1965. On the systematic position of Alzatea verticillata R. and P. Ann. Mo. Bot. Gard. 52:371-378.
41. Macey, J. R., J. A. Schulte II, A. Larson, N. B. Ananjeva, Y. Wang, R. Pethiyagoda, N. Rastegar-Pouyani, and T. J. Papenfuss. 2000. Evaluating trans-Tethys migration: An example using acrodont lizard phylogenetics. Syst. Biol. 49:233-256.
42. Maddison, W. P., M. J. Donoghue, and D. R. Maddison. 1984. Outgroup analysis and parsimony. Syst. Zool. 33:83-103.
43. McKenna, M. C. C. 1973. Sweepstakes, filters, corridors, Noah's Arks, and beached Viking funeral ships in paleogeography. Pp. 291-304 in D. H. Tarling and S. K. Runcorn, eds. Implications of Continental Drift to the Earth Sciences. Academic Press, London.
44. McLoughlin, S. 2001. The breakup history of Gondwana and its impact on pre-Cenozoic floristic provincialism. Austr. J. Bot. 49:271-300.
45. Meijer, W. 1972. The genus Axinandra - Melastomataceae: A missing link in Myrtales? Ceylon J. Sci. Biol. Sci. 10:72-76.
46. Mentink, H., and P. Baas. 1992. Leaf anatomy of the Melastomataceae, Memecylaceae, and Crypteroniaceae. Blumea 37:189-225.
47. Metcalfe, I. 1996. Pre-Cretaceous evolution of SE Asian terranes. Pp. 97-122 in R. Hall and D. Blundell, eds. Tectonic evolution of Southeast Asia. Geol. Soc. Am. Spec. Publ. 106.
48. Morley, R. J. 2000. Origin and Evolution of Tropical Rain Forests. John Wiley and Sons, Chichester, U.K.
49. Mújica, M. B., and D. F. Cutler. 1973. Taxonomic implications of anatomical studies on the Oliniaceae. Kew Bull. 29:93-123.
50. Muller, J. 1975. Note on the pollen morphology of Crypteroniaceae s. l. Blumea 22:275-294.
51. _. 1981. Fossil pollen records of extant angiosperms. Bot. Rev. 47:1-142.
52. Mullis, K. B., and F. A. Faloona. 1987. Specific synthesis of DNA in vitro via a polymerase catalyzed chain reaction. Meth. Enzymol. 155:335-350.
53. Myers, N., R. A. Mittermeier, C. G. Mittermeier, G, A. B. da Fonseca, and J. Kent. 2000. Biodiversity hotspots for conservation priorities. Nature 403:853-858.
54. Nei, M., and S. Kumar. 2000. Molecular Evolution and Phylogenetics. Oxford Univ. Press, Oxford, U.K.
55. Nyffeler, R., and D. A. Baum. 2001. Systematics and character evolution in Durio s. lat. (Malvaceae/Helicteroideae/Durioneae or Bombacaceae-Durioneae). Org. Divers. Evol. 1:165-178.
56. Officer, C. B., A. Hallam, C. L. Drake, and J. D. Devine. 1987. Late Cretaceous and paroxysmal Cretaceous/Tertiary extinctions. Nature 326:143-149.
57. Ohta, T. 1995. Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory. J. Mol. Evol. 40:56-63.
58. Oliver, D. 1895. Rhynchocalyx lawsonioides Oliv. P. 2348 in Hooker's Icon. Pl. Vol. 24. .
59. Ott, L. 1988. An Introduction to Statistical Methods and Data Analysis. 3d. Ed. PWS-Kent, Boston, MA.
60. Page, R. D. M., and E. C. Holmes. 1999. Molecular Evolution: A Phylogenetic Approach. Blackwell, Oxford, U.K.
61. Pereira, J. T., and K. M. Wong. 1995. Three new species of Crypteronia (Crypteroniaceae) from Borneo. Sandakania 6:41-53.
62. Posada, D., and K. A. Crandall. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818.
63. Rao, V. S., and R. Dahlgren. 1969. The floral anatomy and relationships of Oliniaceae. Bot. Not. 122:160-171.
64. Raven, P. H. 1979. Plate tectonics and southern hemisphere biogeography. Pp. 3-24 in K. Larsen and L. B. Holm-Nielsen, eds. Tropical Botany. Academic Press, London.
65. Raven, P. H., and D. I. Axelrod. 1974. Angiosperm biogeography and past continental movements. Ann. Mo. Bot. Gard. 61:539-673.
66. Rennet, S. S., B. D. Foreman, and D. Murray. 2000. Timing trans-antarctic disjunctions in the Atherospermataceae (Laurales): Evidence from coding and noncoding chloroplast sequences. Syst. Biol. 49:579-591.
67. Renner, S. S., G. Clausing, and K. Meyer. 2001. Historical biogeography of Melastomataceae: The roles of Tertiary migration and long-distance dispersal. Am. J. Bot. 88:1290-1300.
68. Richardson, J. E., F. M. Weitz, M. F. Fay, Q. C. B. Cronk, H. P. Linder, G. Reeves, and M. W. Chase. 2001. Rapid and ancient origin of species richness in the Cape Flora of South Africa. Nature 412:181-183.
69. Rodríguez, F., J. L. Oliver, A. Marín, and J. R. Medina. 1990. The general stochastic model of nucleotide substitution. J. Theor. Biol. 142:485-501.
70. Sanderson, M. J. 1997. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14:1218-1231.
71. _. 1998. Estimating rates and time in molecular phylogenies: Beyond the molecular clock? Pp. 242-264 in D. E. Soltis, P. S. Soltis, and J. J. Doyle, eds. Molecular Systematics of Plants II: DNA Sequencing. Kluwer AP, Boston, MA.
72. _. 2001. r8s User's Manual. Ver. 1.01 Beta. Available via http://ginger.ucdavis.edu/r8s/r8s.manual.pdf.
73. _. 2002. Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach. Mol. Biol. Evol. 19:101-109.
74. Sanderson, M. J., and J. A. Doyle. 2001. Sources of error and confidence intervals in estimating the age of angiosperms from rbcL and 18S rDNA data. Am. J. Bot. 88:1499-1516.
75. Scotese, C. R. 1997. Paleogeographic Atlas, PALEOMAP Progress Report No. 90-0497. Dept. of Geology, Univ. of Texas, Arlington, TX.
76. Scotese, C. R., and W. S. McKerrow. 1990. Revised world maps and introduction. Pp. 1-21 in W. S. McKerrow and C. R. Scotese, eds. Paleozoic paleogeography and biogeography, Geol. Soc. Am. Mem. 12:1-21
77. Scotese, C. R., L. M. Gahagan, and R. L. Larson. 1988. Plate tectonic of the Cretaceous and Cenozoic ocean basins. Tectonophysics 155:27-48.
78. Sharma, B. S. 2000. Affinities - Paleobotanical and geological evidences, relationship with adjacent regions, past and recent plant migrations. Pp. 1-200 in N. P. Singh, D. K. Singh, P. K. Hajra, and B. D. Sharma, eds. Flora of India. Botanical Survey of India, Calcutta.
79. Sorhannus, U., and C. Van Bell. 1999. Testing for equality of molecular evolutionary rates: A comparison between a relative-rate test and a likelihood ratio test. Mol. Biol. Evol. 16:849-855.
80. Storey, M., J. J. Mahoney, A. D. Saunders, R. A. Duncan, S. P. Kelley, and M. F. Coffin. 1995. Timing of hot spot-related volcanism and the breakup of Madagascar and India. Science 267:852-855.
81. Swofford, D. L. 2000. PAUP*4.0b8: Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer, Sunderland, MA.
82. Tavaré, S., C. R. Marshall, O. Will, C. Soligo, and R. D. Martin. 2002. Using the fossil record to estimate the age of the last common ancestor of extant primates. Nature 416:726-729.
83. Tobe, H., and P. H. Raven. 1983. The embryology of Axinandra zeylanica (Crypteroniaceae) and the relationships of the genus. Bot. Gaz. 144:426-432.
84. _. 1984. The embryology and relationships of Oliniaceae. Plant Syst. Evol. 146:105-116.
85. _. 1987a. The embryology and relationships of Crypteronia (Crypteroniaceae) and a discussion of the family. Bot. Gaz. 148:103-111.
86. _. 1987b. The embryology and relationships of Dactylocladus (Crypteroniaceae). Bot. Gaz. 148:96-102.
87. Triana, J. J. 1865. Dispositio Melastomacearum. Bull. Int. Bot. Hort. Congr. 1865:457-461.
88. van Beusekom-Osinga, R. J. 1977. Crypteroniaceae. Flora Malesiana 82:189-204.
89. van Beusekom-Osinga, R. J., and C. F. van Beusekom. 1975. Delimitation and subdivision of the Crypteroniaceae (Myrtales). Blumea 22:255-266.
90. van Vliet, G. J. C. M., and P. Baas. 1975. Comparative anatomy of the Crypteroniaceae. Blumea 22:175-195.
91. _. 1984. Wood anatomy and classification of the Myrtales. Ann. Mo. Bot. Gard. 71:783-800.
92. van Vliet, G. J. C. M., J. Koek-Noorman, and B. J. H. Ter Welle. 1981. Wood anatomy, classification, and phylogeny of the Melastomataceae. Blumea 27:463-473.
93. Vinnersten, A., and K. Bremer. 2001. Age and biogeography of major clades in Liliales. Am. J. Bot. 88:1695-1703.
94. Wendel, J. F., and V. A. Albert. 1992. Phylogenetics of the cotton genus Gossypium: Character-state weighted parsimony analysis of chloroplast-DNA restriction site data and its systematic and biogeographic implications. Syst. Bot. 71:115-143.
95. Wickström, N, V. Savolainen, and M. W. Chase. 2001. Evolution of the angiosperms: Calibrating the family tree. Proc. R. Soc. Lond. B 268:2211-2220.
96. Wray, G. A. 2001. Dating branches on the tree of life using DNA. Genome Biol. 3:1.1-1.7.
97. Wu, C.-I., and W.-H. Li, 1985. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. USA 82:1741-1745.
98. Yang, Z. 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
99. Zhu, H. 1997. Ecological and biogeographical studies on the tropical rain forest of south Yunnan, southwestern China with a special reference to its relation with rain forests of tropical Asia. J. Biogeogr. 24:647-662.