메뉴 건너뛰기




Volumn 12, Issue 10, 2002, Pages 1507-1516

Conservation of the biotin regulon and the BirA regulatory signal in eubacteria and archaea

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BIOTIN; BIRA PROTEIN; CARBOXYLASE; HELIX LOOP HELIX PROTEIN; LIGASE; MEMBRANE PROTEIN; REGULATOR PROTEIN; UNCLASSIFIED DRUG;

EID: 0036797992     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.314502     Document Type: Article
Times cited : (179)

References (31)
  • 4
    • 0033564605 scopus 로고    scopus 로고
    • Purification, characterization, DNA sequence and cloning of a pimeloyl-CoA synthetase from Pseudomonas mendocina 35
    • Binieda, A., Fuhrmann, M., Lehner, B., Rey-Berthod, C., Frutiger-Hughes, S., Hughes, G., and Shaw, N.M. 1999. Purification, characterization, DNA sequence and cloning of a pimeloyl-CoA synthetase from Pseudomonas mendocina 35. Biochem. J. 340: 793-801.
    • (1999) Biochem. J , vol.340 , pp. 793-801
    • Binieda, A.1    Fuhrmann, M.2    Lehner, B.3    Rey-Berthod, C.4    Frutiger-Hughes, S.5    Hughes, G.6    Shaw, N.M.7
  • 5
    • 0029974965 scopus 로고    scopus 로고
    • Cloning, sequencing, and characterization of the Bacillus subtilis biotin biosynthetic operon
    • Bower, S., Perkins, J.B., Yocum, R.R., Howitt, C.L., Rahaim, P., and Pero, J. 1996. Cloning, sequencing, and characterization of the Bacillus subtilis biotin biosynthetic operon. J. Bacteriol. 178: 4122-4130.
    • (1996) J. Bacteriol , vol.178 , pp. 4122-4130
    • Bower, S.1    Perkins, J.B.2    Yocum, R.R.3    Howitt, C.L.4    Rahaim, P.5    Pero, J.6
  • 6
    • 0002511994 scopus 로고
    • Biosynthesis of biotin and lipoic acid
    • (ed. F.C. Neidhardt), American Society for Microbiology, Washington, DC
    • DeMoll, E. 1994. Biosynthesis of biotin and lipoic acid. In Escherichia coli and Salmonella. Cellular and molecular biology (ed. F.C. Neidhardt), pp. 704-709. American Society for Microbiology, Washington, DC.
    • (1994) Escherichia Coli and Salmonella. Cellular and Molecular Biology , pp. 704-709
    • DeMoll, E.1
  • 7
    • 0024999332 scopus 로고
    • Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
    • Dodd, I.B. and Egan, J.B. 1990. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 18: 5019-5026.
    • (1990) Nucleic Acids Res , vol.18 , pp. 5019-5026
    • Dodd, I.B.1    Egan, J.B.2
  • 8
    • 0021892975 scopus 로고
    • Regulation of the biotin operon in E. coli
    • Eisenberg, M.A. 1985. Regulation of the biotin operon in E. coli. Ann. N.Y. Acad. Sci. 447: 335-349.
    • (1985) Ann. N.Y. Acad. Sci , vol.447 , pp. 335-349
    • Eisenberg, M.A.1
  • 9
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17: 368-376.
    • (1981) J. Mol. Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 10
    • 0033374594 scopus 로고    scopus 로고
    • Recognition of regulatory sites by genomic comparison
    • Gelfand, M.S. 1999. Recognition of regulatory sites by genomic comparison. Res. Microbiol. 150: 755-771.
    • (1999) Res. Microbiol , vol.150 , pp. 755-771
    • Gelfand, M.S.1
  • 11
  • 13
    • 0035819860 scopus 로고    scopus 로고
    • Cloning and characterization of biotin biosynthetic genes of Kurthia sp
    • Kiyasu, T., Nagahashi, Y., and Hoshino, T. 2001. Cloning and characterization of biotin biosynthetic genes of Kurthia sp. Gene 265: 103-113.
    • (2001) Gene , vol.265 , pp. 103-113
    • Kiyasu, T.1    Nagahashi, Y.2    Hoshino, T.3
  • 14
    • 0034671258 scopus 로고    scopus 로고
    • Multiple disordered loops function in corepressor-induced dimerization of the biotin repressor
    • Kwon, K., Streaker, E.D., Ruparelia, S., and Beckett, D. 2000. Multiple disordered loops function in corepressor-induced dimerization of the biotin repressor. J. Mol. Biol. 304: 821-833.
    • (2000) J. Mol. Biol , vol.304 , pp. 821-833
    • Kwon, K.1    Streaker, E.D.2    Ruparelia, S.3    Beckett, D.4
  • 15
    • 0035205381 scopus 로고    scopus 로고
    • RNA expression analysis using an antisense Bacillus subtilis genome array
    • Lee, J.M, Zhang, S., Saha, S., Santa Anna, S., Jiang, C., and Perkins, J. 2001. RNA expression analysis using an antisense Bacillus subtilis genome array. J. Bacteriol. 183: 7371-7380.
    • (2001) J. Bacteriol , vol.183 , pp. 7371-7380
    • Lee, J.M.1    Zhang, S.2    Saha, S.3    Santa Anna, S.4    Jiang, C.5    Perkins, J.6
  • 16
    • 0030069708 scopus 로고    scopus 로고
    • To be free or not: The fate of pimelate in Bacillus sphaericus and in Escherichia coli
    • Lemoine, Y., Wach, A., and Jeltsch, J.M. 1996. To be free or not: The fate of pimelate in Bacillus sphaericus and in Escherichia coli. Mol. Microbiol. 19: 645-647.
    • (1996) Mol. Microbiol , vol.19 , pp. 645-647
    • Lemoine, Y.1    Wach, A.2    Jeltsch, J.M.3
  • 17
    • 0035859828 scopus 로고    scopus 로고
    • A conserved RNA structure (Thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria
    • Miranda-Rios, J., Navarro, M., and Soberon, M. 2001. A conserved RNA structure (Thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria. Proc. Natl. Acad. Sci. 98: 9736-9741.
    • (2001) Proc. Natl. Acad. Sci , vol.98 , pp. 9736-9741
    • Miranda-Rios, J.1    Navarro, M.2    Soberon, M.3
  • 18
    • 0033565546 scopus 로고    scopus 로고
    • Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes
    • Mironov, A.A., Koonin, E.V., Roytberg, M.A., and Gelfand, M.S. 1999. Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes. Nucleic Acids Res. 27: 2981-2989.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2981-2989
    • Mironov, A.A.1    Koonin, E.V.2    Roytberg, M.A.3    Gelfand, M.S.4
  • 19
    • 0034147960 scopus 로고    scopus 로고
    • GenomeExplorer: Software for analysis of complete bacterial genomes
    • Mironov, A.A., Vinokurova, N.P., and Gelfand, M.S. 2000. GenomeExplorer: Software for analysis of complete bacterial genomes. Mol. Biol. 34: 222-231.
    • (2000) Mol. Biol , vol.34 , pp. 222-231
    • Mironov, A.A.1    Vinokurova, N.P.2    Gelfand, M.S.3
  • 22
    • 0003027868 scopus 로고    scopus 로고
    • Vitamin biosynthesis
    • (eds. A.L. Sonenshein et al.), American Society for Microbiology, Washington, DC
    • Perkins, J.B. and Pero, J.G. 2001. Vitamin biosynthesis. In Bacillus subtilis and its relatives: From genes to cells (eds. A.L. Sonenshein et al.), pp. 279-293. American Society for Microbiology, Washington, DC.
    • (2001) Bacillus Subtilis and Its Relatives: From Genes to Cells , pp. 279-293
    • Perkins, J.B.1    Pero, J.G.2
  • 23
    • 0029858590 scopus 로고    scopus 로고
    • Identification and characterization of transcripts from the biotin biosynthetic operon of Bacillus subtilis
    • Perkins, J.B., Bower, S., Howitt, C.L., Yocum, R.R., and Pero, J. 1996. Identification and characterization of transcripts from the biotin biosynthetic operon of Bacillus subtilis. J. Bacteriol. 178: 6361-6365.
    • (1996) J. Bacteriol , vol.178 , pp. 6361-6365
    • Perkins, J.B.1    Bower, S.2    Howitt, C.L.3    Yocum, R.R.4    Pero, J.5
  • 24
    • 0021883210 scopus 로고
    • Biotin uptake: Influx, efflux and countertransport in Escherichia coli K12
    • Piffeteau, A. and Gaudry, M. 1985. Biotin uptake: Influx, efflux and countertransport in Escherichia coli K12. Biochim. Biophys. Acta 816: 77-82.
    • (1985) Biochim. Biophys. Acta , vol.816 , pp. 77-82
    • Piffeteau, A.1    Gaudry, M.2
  • 25
    • 0027154584 scopus 로고
    • Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium
    • Roth, J.R., Lawrence, J.G., Rubenfield, M., Kieffer-Higgins, S., and Church, G.M. 1993. Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J. Bacteriol. 175: 3303-3316.
    • (1993) J. Bacteriol , vol.175 , pp. 3303-3316
    • Roth, J.R.1    Lawrence, J.G.2    Rubenfield, M.3    Kieffer-Higgins, S.4    Church, G.M.5
  • 26
    • 0039765216 scopus 로고    scopus 로고
    • Acetyl-CoA synthetase from the amitochondriate eukaryote Giardia lamblia belongs to the newly recognized superfamily of acyl-CoA synthetases (nucleoside diphosphate-forming)
    • Sanchez, L.B., Galperin, M.Y., and Muller, M. 2000. Acetyl-CoA synthetase from the amitochondriate eukaryote Giardia lamblia belongs to the newly recognized superfamily of acyl-CoA synthetases (nucleoside diphosphate-forming). J. Biol. Chem. 275: 5794-5803.
    • (2000) J. Biol. Chem , vol.275 , pp. 5794-5803
    • Sanchez, L.B.1    Galperin, M.Y.2    Muller, M.3
  • 27
    • 0034671777 scopus 로고    scopus 로고
    • Expression, purification, and characterization of Biol: A carbon-carbon bond cleaving cytochrome P450 involved in biotin biosynthesis in Bacillus subtilis
    • Stok, J.E. and De Voss, J. 2000. Expression, purification, and characterization of Biol: A carbon-carbon bond cleaving cytochrome P450 involved in biotin biosynthesis in Bacillus subtilis. Arch. Biochem. Biophys. 384: 351-360.
    • (2000) Arch. Biochem. Biophys , vol.384 , pp. 351-360
    • Stok, J.E.1    De Voss, J.2
  • 28
    • 0035016978 scopus 로고    scopus 로고
    • The bio operon on the acquired symbiosis island of Mesorhizobium sp. strain R7A includes a novel gene involved in pimeloyl-CoA synthesis
    • Sullivan, J.T., Brown, S.D., Yocum, R.R., and Ronson, C.W. 2001. The bio operon on the acquired symbiosis island of Mesorhizobium sp. strain R7A includes a novel gene involved in pimeloyl-CoA synthesis. Microbiology 147: 1315-1322.
    • (2001) Microbiology , vol.147 , pp. 1315-1322
    • Sullivan, J.T.1    Brown, S.D.2    Yocum, R.R.3    Ronson, C.W.4
  • 29
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: A tool for genome-scale analysis of protein functions and evolution
    • Tatusov, R.L., Galperin, M.Y., Natale, D.A., and Koonin, E.V. 2000. The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28: 33-36.
    • (2000) Nucleic Acids Res , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 30
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 31
    • 0037100667 scopus 로고    scopus 로고
    • Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation
    • Vitreschak, A.G., Rodionov, D.A., Mironov, A.A., and Gelfand, M.S. 2002. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Res. 30: 3141-3151.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3141-3151
    • Vitreschak, A.G.1    Rodionov, D.A.2    Mironov, A.A.3    Gelfand, M.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.