-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S., Madden, T., Schaffer, A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
2
-
-
0034491031
-
InterPro-An integrated documentation resource for protein families, domains and functional sites
-
Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., Bucher, P., Cerutti, L., Corpet, F., Croning, M.D., et al. 2000. InterPro-An integrated documentation resource for protein families, domains and functional sites. Bioinformatics 16: 1145-1150.
-
(2000)
Bioinformatics
, vol.16
, pp. 1145-1150
-
-
Apweiler, R.1
Attwood, T.K.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
Biswas, M.6
Bucher, P.7
Cerutti, L.8
Corpet, F.9
Croning, M.D.10
-
3
-
-
0033976454
-
GenBank
-
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Rapp, B.A., and Wheeler, D.L. 2000. GenBank. Nucleic Acids Res. 28: 15-18.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 15-18
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Rapp, B.A.5
Wheeler, D.L.6
-
4
-
-
0033564605
-
Purification, characterization, DNA sequence and cloning of a pimeloyl-CoA synthetase from Pseudomonas mendocina 35
-
Binieda, A., Fuhrmann, M., Lehner, B., Rey-Berthod, C., Frutiger-Hughes, S., Hughes, G., and Shaw, N.M. 1999. Purification, characterization, DNA sequence and cloning of a pimeloyl-CoA synthetase from Pseudomonas mendocina 35. Biochem. J. 340: 793-801.
-
(1999)
Biochem. J
, vol.340
, pp. 793-801
-
-
Binieda, A.1
Fuhrmann, M.2
Lehner, B.3
Rey-Berthod, C.4
Frutiger-Hughes, S.5
Hughes, G.6
Shaw, N.M.7
-
5
-
-
0029974965
-
Cloning, sequencing, and characterization of the Bacillus subtilis biotin biosynthetic operon
-
Bower, S., Perkins, J.B., Yocum, R.R., Howitt, C.L., Rahaim, P., and Pero, J. 1996. Cloning, sequencing, and characterization of the Bacillus subtilis biotin biosynthetic operon. J. Bacteriol. 178: 4122-4130.
-
(1996)
J. Bacteriol
, vol.178
, pp. 4122-4130
-
-
Bower, S.1
Perkins, J.B.2
Yocum, R.R.3
Howitt, C.L.4
Rahaim, P.5
Pero, J.6
-
6
-
-
0002511994
-
Biosynthesis of biotin and lipoic acid
-
(ed. F.C. Neidhardt), American Society for Microbiology, Washington, DC
-
DeMoll, E. 1994. Biosynthesis of biotin and lipoic acid. In Escherichia coli and Salmonella. Cellular and molecular biology (ed. F.C. Neidhardt), pp. 704-709. American Society for Microbiology, Washington, DC.
-
(1994)
Escherichia Coli and Salmonella. Cellular and Molecular Biology
, pp. 704-709
-
-
DeMoll, E.1
-
7
-
-
0024999332
-
Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
-
Dodd, I.B. and Egan, J.B. 1990. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 18: 5019-5026.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 5019-5026
-
-
Dodd, I.B.1
Egan, J.B.2
-
8
-
-
0021892975
-
Regulation of the biotin operon in E. coli
-
Eisenberg, M.A. 1985. Regulation of the biotin operon in E. coli. Ann. N.Y. Acad. Sci. 447: 335-349.
-
(1985)
Ann. N.Y. Acad. Sci
, vol.447
, pp. 335-349
-
-
Eisenberg, M.A.1
-
9
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17: 368-376.
-
(1981)
J. Mol. Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
10
-
-
0033374594
-
Recognition of regulatory sites by genomic comparison
-
Gelfand, M.S. 1999. Recognition of regulatory sites by genomic comparison. Res. Microbiol. 150: 755-771.
-
(1999)
Res. Microbiol
, vol.150
, pp. 755-771
-
-
Gelfand, M.S.1
-
11
-
-
0025342768
-
Cloning and characterization of the Bacillus sphaericus genes controlling the bioconversion of pimelate into dethiobiotin
-
Gloeckler, R., Ohsawa, I., Speck, D., Ledoux, C., Bernard, S., Zinsius, M., Villeval, D., Kisou, T., Kamogawa, K., and Lemoine, Y. 1990. Cloning and characterization of the Bacillus sphaericus genes controlling the bioconversion of pimelate into dethiobiotin. Gene 87: 63-70.
-
(1990)
Gene
, vol.87
, pp. 63-70
-
-
Gloeckler, R.1
Ohsawa, I.2
Speck, D.3
Ledoux, C.4
Bernard, S.5
Zinsius, M.6
Villeval, D.7
Kisou, T.8
Kamogawa, K.9
Lemoine, Y.10
-
13
-
-
0035819860
-
Cloning and characterization of biotin biosynthetic genes of Kurthia sp
-
Kiyasu, T., Nagahashi, Y., and Hoshino, T. 2001. Cloning and characterization of biotin biosynthetic genes of Kurthia sp. Gene 265: 103-113.
-
(2001)
Gene
, vol.265
, pp. 103-113
-
-
Kiyasu, T.1
Nagahashi, Y.2
Hoshino, T.3
-
14
-
-
0034671258
-
Multiple disordered loops function in corepressor-induced dimerization of the biotin repressor
-
Kwon, K., Streaker, E.D., Ruparelia, S., and Beckett, D. 2000. Multiple disordered loops function in corepressor-induced dimerization of the biotin repressor. J. Mol. Biol. 304: 821-833.
-
(2000)
J. Mol. Biol
, vol.304
, pp. 821-833
-
-
Kwon, K.1
Streaker, E.D.2
Ruparelia, S.3
Beckett, D.4
-
15
-
-
0035205381
-
RNA expression analysis using an antisense Bacillus subtilis genome array
-
Lee, J.M, Zhang, S., Saha, S., Santa Anna, S., Jiang, C., and Perkins, J. 2001. RNA expression analysis using an antisense Bacillus subtilis genome array. J. Bacteriol. 183: 7371-7380.
-
(2001)
J. Bacteriol
, vol.183
, pp. 7371-7380
-
-
Lee, J.M.1
Zhang, S.2
Saha, S.3
Santa Anna, S.4
Jiang, C.5
Perkins, J.6
-
16
-
-
0030069708
-
To be free or not: The fate of pimelate in Bacillus sphaericus and in Escherichia coli
-
Lemoine, Y., Wach, A., and Jeltsch, J.M. 1996. To be free or not: The fate of pimelate in Bacillus sphaericus and in Escherichia coli. Mol. Microbiol. 19: 645-647.
-
(1996)
Mol. Microbiol
, vol.19
, pp. 645-647
-
-
Lemoine, Y.1
Wach, A.2
Jeltsch, J.M.3
-
17
-
-
0035859828
-
A conserved RNA structure (Thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria
-
Miranda-Rios, J., Navarro, M., and Soberon, M. 2001. A conserved RNA structure (Thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria. Proc. Natl. Acad. Sci. 98: 9736-9741.
-
(2001)
Proc. Natl. Acad. Sci
, vol.98
, pp. 9736-9741
-
-
Miranda-Rios, J.1
Navarro, M.2
Soberon, M.3
-
18
-
-
0033565546
-
Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes
-
Mironov, A.A., Koonin, E.V., Roytberg, M.A., and Gelfand, M.S. 1999. Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes. Nucleic Acids Res. 27: 2981-2989.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 2981-2989
-
-
Mironov, A.A.1
Koonin, E.V.2
Roytberg, M.A.3
Gelfand, M.S.4
-
19
-
-
0034147960
-
GenomeExplorer: Software for analysis of complete bacterial genomes
-
Mironov, A.A., Vinokurova, N.P., and Gelfand, M.S. 2000. GenomeExplorer: Software for analysis of complete bacterial genomes. Mol. Biol. 34: 222-231.
-
(2000)
Mol. Biol
, vol.34
, pp. 222-231
-
-
Mironov, A.A.1
Vinokurova, N.P.2
Gelfand, M.S.3
-
20
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek, R., Fonstein, M., D'Souza, M., Pusch, G.D., and Maltsev, N. 1999. The use of gene clusters to infer functional coupling. Proc. Natl. Acad. Sci. 96: 2896-2901.
-
(1999)
Proc. Natl. Acad. Sci
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'Souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
21
-
-
0033977576
-
WIT: Integrated system for high-throughput genome sequence analysis and metabolic reconstruction
-
Overbeek, R., Larsen, N., Pusch, G.D., D'Souza, M., Selkov Jr., E., Kyrpides, N., Fonstein, M., Maltsev, N., and Selkov, E. 2000. WIT: Integrated system for high-throughput genome sequence analysis and metabolic reconstruction. Nucleic Acids Res. 28: 123-125.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 123-125
-
-
Overbeek, R.1
Larsen, N.2
Pusch, G.D.3
D'Souza, M.4
Selkov E., Jr.5
Kyrpides, N.6
Fonstein, M.7
Maltsev, N.8
Selkov, E.9
-
22
-
-
0003027868
-
Vitamin biosynthesis
-
(eds. A.L. Sonenshein et al.), American Society for Microbiology, Washington, DC
-
Perkins, J.B. and Pero, J.G. 2001. Vitamin biosynthesis. In Bacillus subtilis and its relatives: From genes to cells (eds. A.L. Sonenshein et al.), pp. 279-293. American Society for Microbiology, Washington, DC.
-
(2001)
Bacillus Subtilis and Its Relatives: From Genes to Cells
, pp. 279-293
-
-
Perkins, J.B.1
Pero, J.G.2
-
23
-
-
0029858590
-
Identification and characterization of transcripts from the biotin biosynthetic operon of Bacillus subtilis
-
Perkins, J.B., Bower, S., Howitt, C.L., Yocum, R.R., and Pero, J. 1996. Identification and characterization of transcripts from the biotin biosynthetic operon of Bacillus subtilis. J. Bacteriol. 178: 6361-6365.
-
(1996)
J. Bacteriol
, vol.178
, pp. 6361-6365
-
-
Perkins, J.B.1
Bower, S.2
Howitt, C.L.3
Yocum, R.R.4
Pero, J.5
-
24
-
-
0021883210
-
Biotin uptake: Influx, efflux and countertransport in Escherichia coli K12
-
Piffeteau, A. and Gaudry, M. 1985. Biotin uptake: Influx, efflux and countertransport in Escherichia coli K12. Biochim. Biophys. Acta 816: 77-82.
-
(1985)
Biochim. Biophys. Acta
, vol.816
, pp. 77-82
-
-
Piffeteau, A.1
Gaudry, M.2
-
25
-
-
0027154584
-
Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium
-
Roth, J.R., Lawrence, J.G., Rubenfield, M., Kieffer-Higgins, S., and Church, G.M. 1993. Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J. Bacteriol. 175: 3303-3316.
-
(1993)
J. Bacteriol
, vol.175
, pp. 3303-3316
-
-
Roth, J.R.1
Lawrence, J.G.2
Rubenfield, M.3
Kieffer-Higgins, S.4
Church, G.M.5
-
26
-
-
0039765216
-
Acetyl-CoA synthetase from the amitochondriate eukaryote Giardia lamblia belongs to the newly recognized superfamily of acyl-CoA synthetases (nucleoside diphosphate-forming)
-
Sanchez, L.B., Galperin, M.Y., and Muller, M. 2000. Acetyl-CoA synthetase from the amitochondriate eukaryote Giardia lamblia belongs to the newly recognized superfamily of acyl-CoA synthetases (nucleoside diphosphate-forming). J. Biol. Chem. 275: 5794-5803.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 5794-5803
-
-
Sanchez, L.B.1
Galperin, M.Y.2
Muller, M.3
-
27
-
-
0034671777
-
Expression, purification, and characterization of Biol: A carbon-carbon bond cleaving cytochrome P450 involved in biotin biosynthesis in Bacillus subtilis
-
Stok, J.E. and De Voss, J. 2000. Expression, purification, and characterization of Biol: A carbon-carbon bond cleaving cytochrome P450 involved in biotin biosynthesis in Bacillus subtilis. Arch. Biochem. Biophys. 384: 351-360.
-
(2000)
Arch. Biochem. Biophys
, vol.384
, pp. 351-360
-
-
Stok, J.E.1
De Voss, J.2
-
28
-
-
0035016978
-
The bio operon on the acquired symbiosis island of Mesorhizobium sp. strain R7A includes a novel gene involved in pimeloyl-CoA synthesis
-
Sullivan, J.T., Brown, S.D., Yocum, R.R., and Ronson, C.W. 2001. The bio operon on the acquired symbiosis island of Mesorhizobium sp. strain R7A includes a novel gene involved in pimeloyl-CoA synthesis. Microbiology 147: 1315-1322.
-
(2001)
Microbiology
, vol.147
, pp. 1315-1322
-
-
Sullivan, J.T.1
Brown, S.D.2
Yocum, R.R.3
Ronson, C.W.4
-
29
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov, R.L., Galperin, M.Y., Natale, D.A., and Koonin, E.V. 2000. The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28: 33-36.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
30
-
-
0031574072
-
The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
31
-
-
0037100667
-
Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation
-
Vitreschak, A.G., Rodionov, D.A., Mironov, A.A., and Gelfand, M.S. 2002. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Res. 30: 3141-3151.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3141-3151
-
-
Vitreschak, A.G.1
Rodionov, D.A.2
Mironov, A.A.3
Gelfand, M.S.4
|