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Volumn 16, Issue 19, 2002, Pages 2557-2565

Requirement for two copies of RNA polymerase α subunit C-terminal domain for synergistic transcription activation at complex bacterial promoters

Author keywords

cAMP receptor protein; CRP dependent promoters; RNA polymerase subunit; Transcription activation

Indexed keywords

CYCLIC AMP BINDING PROTEIN; DNA; RNA POLYMERASE;

EID: 0036791765     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.237502     Document Type: Article
Times cited : (19)

References (44)
  • 1
    • 0032502838 scopus 로고    scopus 로고
    • Transcription activation at promoters carrying tandem DNA sites for the Escherichia coli cyclic AMP receptor protein: Organization of the RNA polymerase α subunits
    • Belyaeva, T.A., Rhodius, V.A., Webster, C.L., and Busby, S.J.W. 1998. Transcription activation at promoters carrying tandem DNA sites for the Escherichia coli cyclic AMP receptor protein: Organization of the RNA polymerase α subunits. J. Mol. Biol. 277: 789-804.
    • (1998) J. Mol. Biol. , vol.277 , pp. 789-804
    • Belyaeva, T.A.1    Rhodius, V.A.2    Webster, C.L.3    Busby, S.J.W.4
  • 2
    • 0028142648 scopus 로고
    • Domain organization of RNA polymerase α subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding
    • Blatter, E.E., Ross, W., Tang, H., Gourse, R.L., and Ebright, R.H. 1994. Domain organization of RNA polymerase α subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding. Cell 78: 889-896.
    • (1994) Cell , vol.78 , pp. 889-896
    • Blatter, E.E.1    Ross, W.2    Tang, H.3    Gourse, R.L.4    Ebright, R.H.5
  • 3
    • 0000182975 scopus 로고
    • XL1-blue: A high efficiency plasmid transforming recA Escherichia coli strain with β-galactosidase selection
    • Bullock, W.O., Fernandez, J.M., and Short, J.M. 1987. XL1-blue: a high efficiency plasmid transforming recA Escherichia coli strain with β-galactosidase selection. Biotechniques 5: 376-378.
    • (1987) Biotechniques , vol.5 , pp. 376-378
    • Bullock, W.O.1    Fernandez, J.M.2    Short, J.M.3
  • 4
    • 0028061282 scopus 로고
    • Promoter structure, promoter recognition, and transcription activation in prokaryotes
    • Busby, S. and Ebright, R.H. 1994. Promoter structure, promoter recognition, and transcription activation in prokaryotes. Cell 79: 743-746.
    • (1994) Cell , vol.79 , pp. 743-746
    • Busby, S.1    Ebright, R.H.2
  • 5
    • 0032698634 scopus 로고    scopus 로고
    • Transcription activation by catabolite activator protein (CAP)
    • -. 1999. Transcription activation by catabolite activator protein (CAP). J. Mol. Biol. 293: 199-213.
    • (1999) J. Mol. Biol. , vol.293 , pp. 199-213
  • 6
    • 0028094718 scopus 로고
    • Transcription activation by the Escherichia coli cyclic AMP receptor protein: Receptors bound in tandem at promoters can interact synergistically
    • Busby, S., West, D., Lawes, M., Webster, C., Ishihama, A., and Kolb, A. 1994. Transcription activation by the Escherichia coli cyclic AMP receptor protein: receptors bound in tandem at promoters can interact synergistically. J. Mol. Biol. 241: 341-352.
    • (1994) J. Mol. Biol. , vol.241 , pp. 341-352
    • Busby, S.1    West, D.2    Lawes, M.3    Webster, C.4    Ishihama, A.5    Kolb, A.6
  • 7
    • 0034671288 scopus 로고    scopus 로고
    • RNA polymerase: Structural similarities between bacterial RNA polymerase and eucaryotic RNA polymerase II
    • Ebright, R.H. 2000. RNA polymerase: Structural similarities between bacterial RNA polymerase and eucaryotic RNA polymerase II. J. Mol. Biol. 304: 687-698.
    • (2000) J. Mol. Biol. , vol.304 , pp. 687-698
    • Ebright, R.H.1
  • 8
    • 0033567215 scopus 로고    scopus 로고
    • Bacterial promoter architectures: Subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase α subunit
    • Estrem, S.T., Ross, W., Gaal, T., Chen, Z.W., Niu, W., Ebright, R.H., and Gourse, R.L. 1999. Bacterial promoter architectures: Subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase α subunit. Genes & Dev. 13: 2134-2147.
    • (1999) Genes & Dev. , vol.13 , pp. 2134-2147
    • Estrem, S.T.1    Ross, W.2    Gaal, T.3    Chen, Z.W.4    Niu, W.5    Ebright, R.H.6    Gourse, R.L.7
  • 10
    • 0025072237 scopus 로고
    • Stringent spacing requirements for transcription activation by CRP
    • Gaston, K., Bell, A., Kolb, A., Buc, H., and Busby, S. 1990. Stringent spacing requirements for transcription activation by CRP. Cell 62: 733-743.
    • (1990) Cell , vol.62 , pp. 733-743
    • Gaston, K.1    Bell, A.2    Kolb, A.3    Buc, H.4    Busby, S.5
  • 11
    • 0023785204 scopus 로고
    • Scanning calorimetric study of the thermal unfolding of catabolite activator protein from Escherichia coli in the absence and presence of cyclic mononucleotides
    • Ghosaini, L.R., Brown, A.M., and Sturtevant, J.M. 1988. Scanning calorimetric study of the thermal unfolding of catabolite activator protein from Escherichia coli in the absence and presence of cyclic mononucleotides. Biochemistry 27: 5257-5261.
    • (1988) Biochemistry , vol.27 , pp. 5257-5261
    • Ghosaini, L.R.1    Brown, A.M.2    Sturtevant, J.M.3
  • 12
    • 0033852409 scopus 로고    scopus 로고
    • UPs and downs in bacterial transcription initiation: Role of the α subunit of RNA polymerase in promoter recognition
    • Gourse, R.L., Ross, W., and Gaal, T. 2000. UPs and downs in bacterial transcription initiation: Role of the α subunit of RNA polymerase in promoter recognition. Mol. Microbiol. 37: 687-690.
    • (2000) Mol. Microbiol. , vol.37 , pp. 687-690
    • Gourse, R.L.1    Ross, W.2    Gaal, T.3
  • 14
    • 0002625988 scopus 로고    scopus 로고
    • Promoter selectivity and control of RNA polymerase
    • (eds. F. Eckstein and D. Lilley). Springer, Berlin, Germany
    • Ishihama, A. 1997. Promoter selectivity and control of RNA polymerase. In Nucleic acids and molecular biology (eds. F. Eckstein and D. Lilley), Vol. 11. pp. 53-70. Springer, Berlin, Germany.
    • (1997) Nucleic acids and molecular biology , vol.11 , pp. 53-70
    • Ishihama, A.1
  • 15
  • 16
    • 0002768724 scopus 로고
    • 6 transformants/μg
    • 6 transformants/μg. Focus (BRL) 8: 9-10.
    • (1986) Focus (BRL) , vol.8 , pp. 9-10
    • Jessee, J.1
  • 17
    • 0027476456 scopus 로고
    • Synergistic activation of transcription by Escherichia coli cyclic AMP receptor protein
    • Joung, J.K., Le, L.U., and Hochschild, A. 1993. Synergistic activation of transcription by Escherichia coli cyclic AMP receptor protein. Proc. Natl. Acad. Sci. 90: 3083-3087.
    • (1993) Proc. Natl. Acad. Sci. , vol.90 , pp. 3083-3087
    • Joung, J.K.1    Le, L.U.2    Hochschild, A.3
  • 18
    • 0027236999 scopus 로고
    • Transcriptional regulation by cAMP and its receptor protein
    • Kolb, A., Busby, S., Buc, H., Garges, S., and Adhya, S. 1993. Transcriptional regulation by cAMP and its receptor protein. Annu. Rev. Biochem. 62: 749-795.
    • (1993) Annu. Rev. Biochem. , vol.62 , pp. 749-795
    • Kolb, A.1    Busby, S.2    Buc, H.3    Garges, S.4    Adhya, S.5
  • 20
    • 0033607195 scopus 로고    scopus 로고
    • A genetic method for dissecting the mechanism of transcriptional activator synergy by identical activators
    • Langdon, R.C. and Hochschild, A. 1999. A genetic method for dissecting the mechanism of transcriptional activator synergy by identical activators. Proc. Natl. Acad. Sci. 96: 12673-12678.
    • (1999) Proc. Natl. Acad. Sci. , vol.96 , pp. 12673-12678
    • Langdon, R.C.1    Hochschild, A.2
  • 21
    • 0033082849 scopus 로고    scopus 로고
    • Interactions between the Escherichia coli cAMP receptor protein and the C-terminal domain of the α subunit of RNA polymerase at Class I promoters
    • Law, E.C., Savery, N.J., and Busby, S.J.W. 1999. Interactions between the Escherichia coli cAMP receptor protein and the C-terminal domain of the α subunit of RNA polymerase at Class I promoters. Biochem. J. 337: 415-423.
    • (1999) Biochem. J. , vol.337 , pp. 415-423
    • Law, E.C.1    Savery, N.J.2    Busby, S.J.W.3
  • 22
    • 0032519978 scopus 로고    scopus 로고
    • Spacing requirements for transcription activation by an UP element at class II CRP-dependent promoters
    • Lloyd, G.S., Busby, S.J.W., and Savery, N.S. 1998. Spacing requirements for transcription activation by an UP element at class II CRP-dependent promoters. Biochem. J. 330: 413-420.
    • (1998) Biochem. J. , vol.330 , pp. 413-420
    • Lloyd, G.S.1    Busby, S.J.W.2    Savery, N.S.3
  • 23
    • 0027120805 scopus 로고
    • Broad host range plasmids carrying the Escherichia coli lactose and galactose operons
    • Lodge, J., Fear, J., Busby, S., Gunasekaran, P., and Kamini, N.-R. 1992. Broad host range plasmids carrying the Escherichia coli lactose and galactose operons. FEMS Lett. 95: 271-276.
    • (1992) FEMS Lett. , vol.95 , pp. 271-276
    • Lodge, J.1    Fear, J.2    Busby, S.3    Gunasekaran, P.4    Kamini, N.-R.5
  • 24
    • 0034599706 scopus 로고    scopus 로고
    • The Escherichia coli RNA polymerase α subunit linker: Length requirements for transcription activation at CRP-dependent promoters
    • Meng, W., Savery, N.J., Busby, S.J.W., and Thomas, M.S. 2000. The Escherichia coli RNA polymerase α subunit linker: Length requirements for transcription activation at CRP-dependent promoters. EMBO J. 19: 1555-1566.
    • (2000) EMBO J. , vol.19 , pp. 1555-1566
    • Meng, W.1    Savery, N.J.2    Busby, S.J.W.3    Thomas, M.S.4
  • 25
    • 0029756802 scopus 로고    scopus 로고
    • Transcription factor recognition surface on the RNA polymerase α subunit is involved in contact with the DNA enhancer element
    • Murakami, K., Fujita, N., and Ishihama, A. 1996. Transcription factor recognition surface on the RNA polymerase α subunit is involved in contact with the DNA enhancer element. EMBO J. 15: 4358-4367.
    • (1996) EMBO J. , vol.15 , pp. 4358-4367
    • Murakami, K.1    Fujita, N.2    Ishihama, A.3
  • 26
    • 0031056544 scopus 로고    scopus 로고
    • The two α subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element
    • Murakami, K., Kimura, M., Owens, J.T., Meares, C.F., and Ishihama, A. 1997. The two α subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element. Proc. Natl. Acad. Sci. 94: 1709-1714.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 1709-1714
    • Murakami, K.1    Kimura, M.2    Owens, J.T.3    Meares, C.F.4    Ishihama, A.5
  • 27
    • 0034625251 scopus 로고    scopus 로고
    • Structural organization of the RNA polymerase-promoter open complex
    • Naryshkin, N., Revyakin, A., Kim, Y., Mekler, V., and Ebright, R.H. 2000. Structural organization of the RNA polymerase-promoter open complex. Cell 101: 601-611.
    • (2000) Cell , vol.101 , pp. 601-611
    • Naryshkin, N.1    Revyakin, A.2    Kim, Y.3    Mekler, V.4    Ebright, R.H.5
  • 29
    • 0028096854 scopus 로고
    • Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP) I: Saturation and alanine scanning mutagenesis
    • Niu, W., Zhou, Y., Dong, Q., Ebright, Y.W., and Ebright, R.H. 1994. Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP) I: Saturation and alanine scanning mutagenesis. J. Mol. Biol. 243: 595-602.
    • (1994) J. Mol. Biol. , vol.243 , pp. 595-602
    • Niu, W.1    Zhou, Y.2    Dong, Q.3    Ebright, Y.W.4    Ebright, R.H.5
  • 30
    • 0030582675 scopus 로고    scopus 로고
    • Transcription activation at class II CAP-dependent promoters: Two interactions between CAP and RNA polymerase
    • Niu, W., Kim, Y., Tau, G., Heyduk, T., and Ebright, R.H. 1996. Transcription activation at class II CAP-dependent promoters: Two interactions between CAP and RNA polymerase. Cell 87: 1123-1134.
    • (1996) Cell , vol.87 , pp. 1123-1134
    • Niu, W.1    Kim, Y.2    Tau, G.3    Heyduk, T.4    Ebright, R.H.5
  • 31
    • 0033978636 scopus 로고    scopus 로고
    • Transcription activation mediated by the carboxyl-terminal domain of the RNA polymerase α subunit
    • Ozoline, O.N., Fujita, N., and Ishihama, A. 2000. Transcription activation mediated by the carboxyl-terminal domain of the RNA polymerase α subunit. J. Biol. Chem. 275: 1119-1127.
    • (2000) J. Biol. Chem. , vol.275 , pp. 1119-1127
    • Ozoline, O.N.1    Fujita, N.2    Ishihama, A.3
  • 33
    • 0027244844 scopus 로고
    • Evidence of DNA bending in transcription complexes imaged by scanning force microscopy
    • Rees, W.A., Keller, R.W., Vesenka, J.P., Yang, G., and Bustamente, C. 1993. Evidence of DNA bending in transcription complexes imaged by scanning force microscopy. Science 260: 1646-1649.
    • (1993) Science , vol.260 , pp. 1646-1649
    • Rees, W.A.1    Keller, R.W.2    Vesenka, J.P.3    Yang, G.4    Bustamente, C.5
  • 34
    • 0035281992 scopus 로고    scopus 로고
    • Fine structure of E. coli RNA polymerase-promoter interactions: α Subunit binding to the UP element minor groove
    • Ross, W., Ernst, A., and Gourse. R.L. 2001. Fine structure of E. coli RNA polymerase-promoter interactions: α Subunit binding to the UP element minor groove. Genes & Dev. 15: 491-506.
    • (2001) Genes & Dev. , vol.15 , pp. 491-506
    • Ross, W.1    Ernst, A.2    Gourse, R.L.3
  • 35
    • 0029011384 scopus 로고
    • Transcription activation at Escherichia coli promoters dependent on the cyclic AMP receptor protein: Effects of binding sequences for the RNA polymerase α-subunit
    • Savery, N.J., Rhodius, V.A., Wing, H.J., and Busby, S.J.W. 1995. Transcription activation at Escherichia coli promoters dependent on the cyclic AMP receptor protein: Effects of binding sequences for the RNA polymerase α-subunit. Biochem. J. 309: 77-83.
    • (1995) Biochem. J. , vol.309 , pp. 77-83
    • Savery, N.J.1    Rhodius, V.A.2    Wing, H.J.3    Busby, S.J.W.4
  • 36
    • 0032526956 scopus 로고    scopus 로고
    • Transcription activation at class II CRP-dependent promoters: Identification of determinants in the C-terminal domain of the RNA polymerase α subunit
    • Savery, N.J., Lloyd, G.S, Kainz, M., Gaal, T., Ross, W., Ebright, R.H., Gourse, R.L., and Busby, S.J.W. 1998. Transcription activation at class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase α subunit. EMBO J. 17: 3439-3447.
    • (1998) EMBO J. , vol.17 , pp. 3439-3447
    • Savery, N.J.1    Lloyd, G.S.2    Kainz, M.3    Gaal, T.4    Ross, W.5    Ebright, R.H.6    Gourse, R.L.7    Busby, S.J.W.8
  • 37
    • 0036206935 scopus 로고    scopus 로고
    • Determinants of the C-terminal domain of the Escherichia coli RNA polymerase α subunit important for transcription at class I CRP-dependent promoters
    • Savery, N.J., Lloyd, G.S., Busby, S.J.W., Thomas, M.S., Ebright, R.H., and Gourse, R.L. 2002. Determinants of the C-terminal domain of the Escherichia coli RNA polymerase α subunit important for transcription at class I CRP-dependent promoters. J. Bacteriol. 184: 2273-2280.
    • (2002) J. Bacteriol. , vol.184 , pp. 2273-2280
    • Savery, N.J.1    Lloyd, G.S.2    Busby, S.J.W.3    Thomas, M.S.4    Ebright, R.H.5    Gourse, R.L.6
  • 38
    • 0025914242 scopus 로고
    • Crystal structure of a CAP-DNA complex: The DNA is bent by 90 degrees
    • Schultz, S.C., Shields, G.C., and Steitz, T.A. 1991. Crystal structure of a CAP-DNA complex: The DNA is bent by 90 degrees. Science 253: 1001-1007.
    • (1991) Science , vol.253 , pp. 1001-1007
    • Schultz, S.C.1    Shields, G.C.2    Steitz, T.A.3
  • 39
    • 0028598437 scopus 로고
    • Location, structure and function of the target of a transcriptional activator protein
    • Tang, H., Severinov, K., Goldfarb, A., Fenyo, D., Chait, B., and Ebright, R.H. 1994. Location, structure and function of the target of a transcriptional activator protein. Genes & Dev. 8: 3058-3067.
    • (1994) Genes & Dev. , vol.8 , pp. 3058-3067
    • Tang, H.1    Severinov, K.2    Goldfarb, A.3    Fenyo, D.4    Chait, B.5    Ebright, R.H.6
  • 40
    • 0037161194 scopus 로고    scopus 로고
    • Architectural requirements for optimal activation by tandem CRP molecules at a class I CRP-dependent promoter
    • Tebbutt, J., Rhodius, V., Webster, C., and Busby, S. 2002. Architectural requirements for optimal activation by tandem CRP molecules at a class I CRP-dependent promoter. FEMS Lett. 210: 55-60.
    • (2002) FEMS Lett. , vol.210 , pp. 55-60
    • Tebbutt, J.1    Rhodius, V.2    Webster, C.3    Busby, S.4
  • 41
    • 0035895434 scopus 로고    scopus 로고
    • Interaction of the C-terminal domain of the E. coli RNA polymerase α subunit with the UP element: Recognizing the backbone structure in the minor groove surface
    • Yasuno, K., Yamazaki, T., Tanaka, Y., Kodama, T.S., Matsugami, A., Katahira, M., Ishihama, A., and Kyogoku, M. 2001. Interaction of the C-terminal domain of the E. coli RNA polymerase α subunit with the UP element: Recognizing the backbone structure in the minor groove surface. J. Mol. Biol. 306: 213-225.
    • (2001) J. Mol. Biol. , vol.306 , pp. 213-225
    • Yasuno, K.1    Yamazaki, T.2    Tanaka, Y.3    Kodama, T.S.4    Matsugami, A.5    Katahira, M.6    Ishihama, A.7    Kyogoku, M.8
  • 42
    • 0028109558 scopus 로고
    • Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP) II: Role at class I and class II CAP-dependent promoters
    • Zhou, Y., Merkel, T.J., and Ebright, R.H. 1994a. Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP) II: Role at class I and class II CAP-dependent promoters. J. Mol. Biol. 243: 603-610.
    • (1994) J. Mol. Biol. , vol.243 , pp. 603-610
    • Zhou, Y.1    Merkel, T.J.2    Ebright, R.H.3
  • 43
    • 0028024291 scopus 로고
    • The functional subunit of a dimeric transcription activator depends upon promoter architecture
    • Zhou, Y., Pendergrast, P.S., Bell, A., Williams, R., Busby, S., and Ebright, R.H. 1994b. The functional subunit of a dimeric transcription activator depends upon promoter architecture. EMBO J. 13: 4549-4557.
    • (1994) EMBO J. , vol.13 , pp. 4549-4557
    • Zhou, Y.1    Pendergrast, P.S.2    Bell, A.3    Williams, R.4    Busby, S.5    Ebright, R.H.6
  • 44
    • 0028221647 scopus 로고
    • Assymetric arrangement of two α subunits within Escherichia coli RNA polymerase. Involvement of one α subunit in contact with cAMP receptor protein
    • Zou, C., Fujita, N., and Ishihama, A. 1993. Assymetric arrangement of two α subunits within Escherichia coli RNA polymerase. Involvement of one α subunit in contact with cAMP receptor protein. J. Mol. Biol. 236: 1283-1288.
    • (1993) J. Mol. Biol. , vol.236 , pp. 1283-1288
    • Zou, C.1    Fujita, N.2    Ishihama, A.3


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