Interactions of phospholipids with the potassium channel KcsA

Biophysical Journal

Volumn 83, Issue 4, 2002, Pages 2026-2038

  Williamson, Ian M ^a   Alvis, Simon J ^a   Malcolm East, J ^a   Lee, Anthony G ^a  

^a UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

POTASSIUM CHANNEL;

ALPHA HELIX; ARTICLE; BILAYER MEMBRANE; CRYSTAL STRUCTURE; ELECTRON SPIN RESONANCE; HYDROPHOBICITY; LIGAND BINDING; LIPID BILAYER; MOLECULAR DYNAMICS; NONHUMAN; PHOSPHOLIPID METABOLISM; PROTEIN PROTEIN INTERACTION; THICKNESS;

STREPTOMYCES; STREPTOMYCES LIVIDANS;

EID: 0036789731     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(02)73964-7     Document Type: Article

References (49)

1. Bartlett, G. R. 1959. Phosphorus assay in column chromatography. J. Biol. Chem. 234:466-468.
2. Bligh, E. G., and Dyer, W. J. 1959. A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol. 37:911-915.
3. Bolen, E. J., and P. W. Holloway. 1990. Quenching of tryptophan fluorescence by brominated phospholipid. Biochemistry. 29:9638-9643.
4. 1H NMR study. J. Phys. Chem. 97: 2967-2973.
5. Caffrey, M., and G. W. Feigenson. 1981. Fluorescence quenching in model membranes: 3. Relationship between calcium adenosinetriphosphatase enzyme activity and the affinity of the protein for phosphatidylcholines with different acyl chain characteristics. Biochemistry. 20:1949-1961.
6. Chung, L. A., J. D. Lear, and W. F. DeGrado. 1992. Fluorescence studies of the secondary structure and orientation of a model ion channel peptide in phospholipid vesicles. Biochemistry. 31:6608-6616.
7. Cortes, D. M., L. G. Cuello, and E. Perozo. 2001. Molecular architecture of full-length KcsA: role of cytoplasmic domains in ion permeation and activation gating. J. Gen. Physiol. 117:165-180.
8. Dewey, T. G., and G. G. Hammes. 1980. Calculations of fluorescence resonance energy transfer on surfaces. Biophys. J. 32:1023-1036.
9. + conduction and selectivity. Science. 280:69-77.
10. Dumas, F., J. F. Tocanne, G. Leblanc, and M. C. Lebrun. 2000. Consequences of hydrophobic mismatch between lipids and melibiose permease on melibiose transport. Biochemistry. 39:4846-4854.
11. East, J. M., and A. G. Lee. 1982. Lipid selectivity of the calcium and magnesium ion dependent adenosinetriphosphatase, studied with fluorescence quenching by a brominated phospholipid. Biochemistry. 21: 4144-4151.
12. East, J. M., D. Melville, and A. G. Lee. 1985. Exchange rates and numbers of annular lipids for the calcium and magnesium ion dependent adenosinetriphosphatase. Biochemistry. 24:2615-2623.
13. Esnouf, R. M. 1999. Further additions to MolScript version 1.4, including reading and contouring of electron-density maps. Acta Cryst. Section D. 55:938-940.
14. Fattal, D. R., and A. Ben-Shaul. 1993. A molecular model for lipid-protein interaction in membranes: the role of hydrophobic mismatch. Biophys. J. 65:1795-1809.
15. + channel. Biochemistry. 36:10335-10342.
16. Jacobs, R. E., and S. H. White. 1989. The nature of the hydrophobic binding of small peptides at the bilayer interface: implications for the insertion of transbilayer helices. Biochemistry. 28:3421-3437.
17. Killian, J. A. 1998. Hydrophobic mismatch between proteins and lipids in membranes. Biochim. Biophys. Acta. 1376:401-416.
18. Koppel, D. E., P. J. Fleming, and P. Strittmatter. 1979. Intramembrane positions of membrane bound chromophores determined by excitation energy transfer. Biochemistry. 18:5450-5457.
19. Ladokhin, A. S., S. Jayasinghe, and S. H. White. 2000. How to measure and analyze tryptophan fluorescence in membrane properly, and why bother? Anal. Biochem. 285:235-245.
20. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227:680-685.
21. Lakowicz, J. R. 1999. Principles of Fluorescence Spectroscopy. Kluwer Academic/Plenum Press, New York.
22. Landolt-Marticorena, C., K. A. Williams, C. M. Deber, and R. A. F. Reithmeier. 1993. Non-random distribution of amino acids in the transmembrane segments of type 1 single span membrane proteins. J. Mol. Biol. 229:602-608.
23. Lee, A. G. 1977. Lipid phase transitions and phase diagrams: II. Mixtures involving lipids. Biochim. Biophys. Acta. 472:285-344.
24. Lee, A. G. 1998. How lipids interact with an intrinsic membrane protein: the case of the calcium pump. Biochim. Biophys. Acta. 1376:381-390.
25. Lewis, B. A., and D. M. Engelman. 1983. Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles. J. Mol. Biol. 166:211-217.
26. Liu, Y. S., P. Sompornpisut, and E. Perozo. 2001. Structure of the KcsA channel intracellular gate in the open state. Nat. Struct. Biol. 8:883-887.
27. London, E., and G. W. Feigenson. 1981. Fluorescence quenching in model membranes: 1. Characterization of quenching caused by a spin-labeled phospholipid. Biochemistry. 20:1932-1938.
28. Mall, S., R. Broadbridge, R. P. Sharma, J. M. East, and A. G. Lee. 2001. Self-association of model transmembrane α-helices is modulated by lipid structure. Biochemistry. 40:12379-12386.
29. Mall, S., R. Broadbridge, R. P. Sharma, A. G. Lee, and J. M. East. 2000. Effects of aromatic residues at the ends of transmembrane alpha-helices on helix interactions with lipid bilayers. Biochemistry. 39:2071-2078.
30. Marsh, D. 1995. Lipid-protein interactions and heterogeneous lipid distribution in membranes. Mol. Membr. Biol. 12:59-64.
31. Mouritsen, O. G., and M. Bloom. 1984. Mattress model of lipid-protein interactions in membranes. Biophys. J. 46:141-153.
32. Mouritsen, O. G., and M. Bloom. 1993. Models of lipid-protein interactions in membranes. Annu. Rev. Biophys. Bioeng. 22:145-171.
33. Nielsen, C., M. Goulian, and O. S. Andersen. 1998. Energetics of inclusion-induced bilayer deformations. Biophys. J. 74:1966-1983.
34. O'Keeffe, A. H., J. M. East, and A. G. Lee. 2000. Selectivity in lipid binding to the bacterial outer membrane protein OmpF. Biophys. J. 79:2066-2074.
35. Pilot, J. D., J. M. East, and A. G. Lee. 2001. Effects of bilayer thickness on the activity of diacylglycerol kinase of Escherichia coli. Biochemistry. 40:8188-8195.
36. Ren, J. H., S. Lew, Z. W. Wang, and E. London. 1997. Transmembrane orientation of hydrophobic α-helices is regulated both by the relationship of helix length to bilayer thickness and by the cholesterol concentration. Biochemistry. 36:10213-10220.
37. Rooney, E. K., and A. G. Lee. 1986. Fitting fluorescence emission spectra of probes bound to biological membranes. J. Biochem. Biophys. Methods. 120:175-189.
38. Roth, M., B. Arnoux, and F. Reiss-Husson. 1991. Structure of the detergent phase and protein-detergent interactions in crystals of the wild-type (strain Y) Rhodobacter sphaeroides photochemical reaction center. Biochemistry. 30:9403-9413.
39. Schrempf, H., O. Schmidt, R. Kummerlen, S. Hinnah, D. Muller, M. Betzler, T. Steinkamp, and R. Wagner. 1995. A prokaryotic potassium ion channel with two predicted transmembrane segments from Streptomyces lividans. EMBO J. 14:5170-5178.
40. Sperotto, M. M., and O. G. Mouritsen. 1988. Dependence of lipid membrane phase transition temperature on the mismatch of protein and lipid hydrophobic thickness. Eur. Biophys. J. 16:1-10.
41. Tieleman, D. P., S. J. Marrink, and H. J. C. Berendsen. 1997. A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems. Biochim. Biophys. Acta. 1331:235-270.
42. Verma, J. N., and G. K. Khuller. 1983. Lipids of actinomycetes. Adv. Lipid Res. 20:257-316.
43. Wallin, E., T. Tsukihara, S. Yoshikawa, G. von Heijne, and A. Elofsson. 1997. Architecture of helix bundle membrane proteins: an analysis of cytochrome c oxidase from bovine mitochondria. Protein. Sci. 6:808-815.
44. Webb, R. J., J. M. East, R. P. Sharma, and A. G. Lee. 1998. Hydrophobic mismatch and the incorporation of peptides into lipid bilayers: a possible mechanism for retention in the Golgi. Biochemistry. 37:673-679.
45. White, S. H., and W. C. Wimley. 1999. Membrane protein folding and stability: physical principles. Annu. Rev. Biophys. Biomol. Struc. 28: 319-365.
46. Wiener, M. C., G. I. King, and S. H. White. 1991. Structure of a fluid dioleoylphosphatidylcholne bilayer determined by joint refinement of X-ray and neutron diffraction data: I. Scaling of neutron data and the distribution of double bonds and water. Biophys. J. 60:568-576.
47. Wiener, M. C., and S. H. White. 1992. Structure of a fluid dioleoylphosphatidylcholne bilayer determined by joint refinement of X-ray and neutron diffraction data: III. complete structure. Biophys. J. 61: 434-447.
48. Yau, W. M., W. C. Wimley, K. Gawrisch, and S. H. White. 1998. The preference of tryptophan for membrane interfaces. Biochemistry. 37: 14713-14718.
49. + channel-Fab complex at 2.0 Å resolution. Nature. 414:43-48.