Nucleotide polymorphism at the Atmyb2 locus of the wild plant Arabidopsis thaliana

Genetical Research

Volumn 80, Issue 2, 2002, Pages 89-98

  Kamiya, Taku ^a   Kawabe, Akira ^a   Miyashita, Naohiko T ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MADS DOMAIN PROTEIN; PROTEIN ATMYB2; REGULATOR PROTEIN; UNCLASSIFIED DRUG; NUCLEOTIDE; PLANT DNA;

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; ECOTYPE; GENE EXPRESSION REGULATION; GENE LOCUS; GENE MUTATION; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GROWTH; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; SPECIES DIFFERENCE; STRAIN DIFFERENCE; WILD TYPE; COMPARATIVE STUDY; GENE; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETICS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; ARABIS; ARABIS GEMMIFERA; CRUCIHIMALAYA HIMALAICA; EMBRYOPHYTA;

ARABIDOPSIS; DNA, PLANT; GENES, PLANT; NUCLEOTIDES; POLYMORPHISM, GENETIC; RECOMBINATION, GENETIC; SPECIES SPECIFICITY; VARIATION (GENETICS);

EID: 0036774480     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672302005815     Document Type: Article

References (34)

1. Abe, H., Shinozaki, K. Y., Urao, T., Iwasaki, T., Hosokawa, D. & Shinozaki, K. (1997). Role of Arabidopsis MYC and MYB homologues in drought- and abscisic acid-regulated gene expression. The Plant Cell 9, 1859-1867.
2. Fu, Y. X. & Li, W. H. (1993). Statistical tests of neutrality of mutation. Genetics 133, 693-709.
3. Grotewold, E., Athma, P. & Peterson, T. (1991). Alternatively spliced products of the maize P gene encode proteins with homology to the DNA binding domain of Myb-like transcription factors. Proceedings of the National Academy of Sciences of the USA 88, 4587-4591.
4. Hanfstingl, U., Berry, A., Kellog, E. A., Costa Iii, J. T., Rudiger, W. & Ausubel, M. (1994). Haplotype divergence coupled with lack of diversity at the Arabidopsis thaliana alcohol dehydrogenase locus: role for both balancing and directional selection? Genetics 138, 811-828.
5. Hoeren, F. U., Dolferus, R., Wu, Y., Peacock, W. J. & Dennis, E. S. (1998). Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen. Genetics 149, 479-490.
6. Hudson, R. R. (1987). Estimating the recombination parameter of a finite population model without selection. Genetical Research 50, 245-250.
7. Hudson, R. R. & Kaplan, N. L. (1985). Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164.
8. Hudson, R. R., Kreitman, M. & Aguadé, M. (1987). A test of neutral molecular evolution based on nucleotide data. Genetics 116, 153-159.
9. Innan, H., Tajima, F., Terauchi, R. & Miyashita, N. T. (1996). Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana. Genetics 143, 1441-1452.
10. Jin, H. & Martin, C. (1999). Multifunctionality and diversity within the plant MYB-gene family. Plant Molecular Biology 41, 577-585.
11. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism (ed. H. Munro), pp. 21-132. New York, USA: Academic Press.
12. Kawabe, A., Innan, H., Terauchi, R. & Miyashita, N. T. (1997). Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thaliana. Molecular Biology and Evolution 14, 1303-1315.
13. Kawabe, A. & Miyashita, N. T. (1999). DNA variation in the basic chitinase locus (ChiB) region of the wild plant Arabidopsis thaliana. Genetics 153, 1445-1453.
14. Kawabe, A., Yamane, K. & Miyashita, N. T. (2000). DNA polymorphism at the cytosolic phosphoglucose isomerase (PgiC) locus of the wild plant Arabidopsis thaliana. Genetics 156, 1339-1347.
15. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge, UK: Cambridge University Press.
16. Kuittinen, H. & Aguadé, M. (2000). Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana. Genetics 155, 863-872.
17. Lipsick, J. S. (1996), One billion years of MYB. Oncogene 13, 223-235.
18. Lüsher, B. & Eisenman, R. (1990). New light on Myc and Myb. Part 2. Myb. Genes and Development 4, 7092-7096.
19. Mcdonald, J. H. & Kreitman, M. (1991). Adaptive protein evolution at the Adh locus in Drosophila. Nature 351, 652-654.
20. Miyashita, N. T. (2001). DNA variation in the 5′ upstream region of the Adh locus of the wild plants Arabidopsis thaliana and Arabis gemmifera. Molecular Biology and Evolution 18, 164-171.
21. Miyashita, N. T., Innan, H. & Terauchi, R. (1996). Intra- and interspecific variation in the alcohol dehydrogenase locus region of wild plants Arabis gemmifera and Arabidopsis thaliana. Molecular Biology and Evolution 13, 433-436.
22. Miyashita, N. T., Kawabe, A., Innan, H. & Terauchi, R. (1998). Intra- and interspecific DNA variation and codon bias of alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species. Molecular Biology and Evolution 15, 1420-1429.
23. Miyata, T., Miyazawa, S. & Yasunaga, T. (1979). Two types of amino acid substitutions in protein evolution. Journal of Molecular Evolution 12, 219-236.
24. Moriyama, E. & Powell, J. R. (1996). Intraspecific nuclear DNA variation in Drosophila. Molecular Biology and Evolution 13, 261-277.
25. Purugganan, M. D. & Suddith, J. I. (1998). Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: nonneutral evolution and naturally occurring variation in floral homeotic function. Proceedings of the National Academy of Sciences of the USA 95, 8130-8134.
26. Purugganan, M. D. & Suddith, J. I. (1999). Molecular population genetics of floral homeotic loci: departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana. Genetics 151, 839-848.
27. Romero, I., Fuertes, A., Benito, M. J., Malpica, J. M., Leyva, A. & Paz-Ares, J. (1998). More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. The Plant Journal 14, 273-284.
28. Rozas, J. & Rozas, R. (1999). DnaSP version 3.00, a novel software package for extensive molecular population genetics analysis. Computer Applications in the Biosciences 13, 307-311.
29. Tajima, F. (1989). Statistical test for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
30. Tajima, F. & Nei, M. (1984). Estimation of evolutionary distance between nucleotide sequences. Molecular Biology and Evolution 1, 269-285.
31. Urao, T., Shinozaki, K. Y., Urao, S. & Shinozaki, K. (1993). An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. The Plant Cell 5, 1529-1539.
32. Urao, T., Noji, M., Shinozaki, K. Y. & Shinozaki, K. (1996). A transcriptional activation domain of ATMYB2, a drought-inducible Arabidopsis Myb-related protein. The Plant Journal 10, 1145-1148.
33. Watterson, G. A. (1975). On the number of segregating sites in genetical models without recombination. Theoretical Population Biology 7, 256-276.
34. Yamaguchi-Shinozaki, K., Urao, T. & Shinozaki, K. (1995). Regulation of genes that are induced by drought stress in Arabidopsis thaliana. Journal of Plant Research 108, 127-136.