Phrases of the secondary structures of RNA sequences

Europhysics Letters

Volumn 59, Issue 6, 2002, Pages 903-909

  Bundschuh, R ^a,b   Hwa, T ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0036740902     PISSN: 02955075     EISSN: None     Source Type: Journal    
DOI: 10.1209/epl/i2002-00128-3     Document Type: Article

References (29)

1. See, e.g., Gesteland R. F. and Atkins J. F. (Editors), The RNA World: The Nature of Modern RNA Suggests a Prebiotic RNA World (Cold Spring Harbor Laboratory Press) 1993.
2. Dill K. A. et al., Protein Sci., 4 (1995) 561; Onuchic J. N., Luthey-Schulten Z. and Wolynes P. G., Annu. Rev. Phys. Chem., 48 (1997) 545; Garel T., Orland H. and Pitard E., J. Phys. I, 7 (1997) 1201; Suakhnovich E. I., Curr. Opt. Struct. Biol., 7 (1997) 29.
3. Dill K. A. et al., Protein Sci., 4 (1995) 561; Onuchic J. N., Luthey-Schulten Z. and Wolynes P. G., Annu. Rev. Phys. Chem., 48 (1997) 545; Garel T., Orland H. and Pitard E., J. Phys. I, 7 (1997) 1201; Suakhnovich E. I., Curr. Opt. Struct. Biol., 7 (1997) 29.
4. Dill K. A. et al., Protein Sci., 4 (1995) 561; Onuchic J. N., Luthey-Schulten Z. and Wolynes P. G., Annu. Rev. Phys. Chem., 48 (1997) 545; Garel T., Orland H. and Pitard E., J. Phys. I, 7 (1997) 1201; Suakhnovich E. I., Curr. Opt. Struct. Biol., 7 (1997) 29.
5. Dill K. A. et al., Protein Sci., 4 (1995) 561; Onuchic J. N., Luthey-Schulten Z. and Wolynes P. G., Annu. Rev. Phys. Chem., 48 (1997) 545; Garel T., Orland H. and Pitard E., J. Phys. I, 7 (1997) 1201; Suakhnovich E. I., Curr. Opt. Struct. Biol., 7 (1997) 29.
6. Tinoco I. Jr. and Bustamante C., J. Mol. Biol., 293 (1999) 271 and references therein.
7. McCaskill J. S., Biopolymers, 29 (1990) 1105..
8. Zuker M. and Stiegler P., Nucl. Acid. Res., 9 (1981) 133; Hofacker I. L., Fontana W., Stadler P. F., Bonhoeffer S., Tacker M. and Schuster P., Monatsh. Chem., 125 (1994) 167; Chen S. J. and Dill K. A., Proc. Natl. Acad. Sci. USA, 7 (2000) 646.
9. Zuker M. and Stiegler P., Nucl. Acid. Res., 9 (1981) 133; Hofacker I. L., Fontana W., Stadler P. F., Bonhoeffer S., Tacker M. and Schuster P., Monatsh. Chem., 125 (1994) 167; Chen S. J. and Dill K. A., Proc. Natl. Acad. Sci. USA, 7 (2000) 646.
10. Zuker M. and Stiegler P., Nucl. Acid. Res., 9 (1981) 133; Hofacker I. L., Fontana W., Stadler P. F., Bonhoeffer S., Tacker M. and Schuster P., Monatsh. Chem., 125 (1994) 167; Chen S. J. and Dill K. A., Proc. Natl. Acad. Sci. USA, 7 (2000) 646.
11. Freier S. M., Kierzek R., Jaeger J. A., Sugimoto N., Caruthers M. H., Neilson T. and Turner D. H., Proc. Natl. Acad. Sci. USA, 83 (1986) 9373.
12. De Gennes P.-G., Biopolymers, 6 (1968) 715.
13. Moroz J. D. and Hwa T., in preparation.
14. Higgs P. G., Phys. Rev. Lett., 76 (1996) 704.
15. Pagnani A., Parisi G. and Ricci-Tersenghi F., Phys. Rev. Lett., 84 (2000) 2026; 86 (2001) 1383; Hartmann A. K., Phys. Rev. Lett., 86 (2001) 1382.
16. Pagnani A., Parisi G. and Ricci-Tersenghi F., Phys. Rev. Lett., 84 (2000) 2026; 86 (2001) 1383; Hartmann A. K., Phys. Rev. Lett., 86 (2001) 1382.
17. Pagnani A., Parisi G. and Ricci-Tersenghi F., Phys. Rev. Lett., 84 (2000) 2026; 86 (2001) 1383; Hartmann A. K., Phys. Rev. Lett., 86 (2001) 1382.
18. Krzakala F., Mézard M. and Müller M., Europhys. Lett., 57 (2002) 752; Marinari E., Pagnani A. and Ricci-Tersenghi F., Phys. Rev. E, 65 (2002) 041919.
19. Krzakala F., Mézard M. and Müller M., Europhys. Lett., 57 (2002) 752; Marinari E., Pagnani A. and Ricci-Tersenghi F., Phys. Rev. E, 65 (2002) 041919.
20. Bundschuh R. and Hwa T., Phys. Rev. Lett., 83 (1999) 1479.
21. Higgs P. G., Q. Rev. Biophys., 33 (2000) 199.
22. Garel T. and Orland H., Europhys. Lett., 6 (1988) 307; Shakhnovich E. I. and Gutin A. M., J. Phys. A, 22 (1989) 1647.
23. Garel T. and Orland H., Europhys. Lett., 6 (1988) 307; Shakhnovich E. I. and Gutin A. M., J. Phys. A, 22 (1989) 1647.
24. Hwa T. and Lässig M., Phys. Rev. Lett., 76 (1996) 2591; Drasdo D., Hwa T. and Lässig M., J. Comp. Biol., 7 (2001) 115.
25. Hwa T. and Lässig M., Phys. Rev. Lett., 76 (1996) 2591; Drasdo D., Hwa T. and Lässig M., J. Comp. Biol., 7 (2001) 115.
26. Waterman M. S., in Advances in Mathematics, Supplementary Studies, edited by ROTA G.-C., Vol. 1 (Academic Press, New York) 1978, pp. 167-212.
27. Bundschuh R. and Hwa T., submitted to Phys. Rev. E.
28. Arratia R., Gordon L. and Waterman M. S., Ann. Stat., 18 (1990) 539.
29. Tang L.-H. and Chaté H., Phys. Rev. Lett., 86 (2001) 830