Testing the accuracy of TreeMap and Brooks parsimony analyses of coevolutionary patterns using artificial associations

Cladistics

Volumn 18, Issue 4, 2002, Pages 416-435

  Dowling, Ashley P G ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL METHOD; COEVOLUTION; HOST-PARASITE INTERACTION; PHYLOGENETICS;

EID: 0036705270     PISSN: 07483007     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0748-3007(02)00007-5     Document Type: Article

References (31)

1. Brooks, D.R., 1979. Testing the context and extent of host-parasite coevolution. Syst. Zool. 28, 299-307.
2. Brooks, D.R., 1981. Hennig parasitological method - a proposed solution. Syst. Zool. 30, 229-249.
3. Brooks, D.R., 1985. Historical ecology: a new approach to studying the evolution of ecological associations. Ann. Missouri Bot. Garden 72, 660-680.
4. Brooks, D.R., 1990. Parsimony analysis in historical biogeography and coevolution - methodological and theoretical update. Syst. Zool. 39, 14-30.
5. Brooks, D.R., McLennan, D.A., 1991. Phylogeny, Ecology, and Behavior: A Research Program in Comparative Biology. University of Chicago Press, Chicago.
6. Brooks, D.R., McLennan, D.A., 1993. Parascript: Parasites and the Language of Evolution. Smithsonian Press, Washington, DC.
7. Brooks, D.R., McLennan, D.A., 2001. A comparison of a discovery-based and an event-based method of historical biogeography. J. Biogeogr. 28, 757-767.
8. Brooks, D.R., McLennan, D.A., 2002. The Nature of Discovery: An Evolutionary Voyage of Discovery. University of Chicago Press, Chicago.
9. Brooks, D.R., Van Veller, M.G.P., McLennan, D.A., 2001. How to do BPA, really. J. Biogeogr. 28, 345-358.
10. Charleston, M.A., 1998. Jungles: a new solution to the host/parasite phylogeny reconciliation problem. Math. Biosci. 149, 191-223.
11. Enghoff, H., 1996. Widespread taxa, sympatry, dispersal, and an algorithm for resolved area cladograms. Cladistics 12, 349-364.
12. Hafner, M.S., Sudman, P.D., Villablanca, F.X., Sprading, T.A., Demastes, J.W., Nadler, S.A., 1994. Disparate rates of molecular evolution in cospeciating host and parasites. Science 265, 1087-1090.
13. Hoberg, E.P., Brooks, D.R., Siegel-Causey, D., 1997. Host-parasite co-speciation: history, principles, and prospects. In: Clayton, D.H., Moore, J. (Eds.), Host-Parasite Evolution: General Principles and Avian Models. Oxford University Press, Oxford, pp. 212-235.
14. Hugot, J.P., 1999. Primates and their pinworm parasites: the Cameron hypothesis revisited. Syst. Biol. 48, 523-546.
15. Kluge, A.G., Farris, J.S., 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18, 1-32.
16. Maddison, W., Maddison, D., 1992. MacClade: Analysis of Phylogeny and Character Evolution. Sinauer, Sunderland, MA.
17. Nelson, G., Platnick, N.I., 1981. Systematics and Biogeography: Cladistics and Vicariance. Columbia University Press, New York.
18. Page, R.D.M., 1990. Component analysis - a valiant failure. Cladistics 6, 119-136.
19. Page, R.D.M., 1994a. Maps between trees and cladistic analysis of historical associations among genes, organisms, and areas. Syst. Biol. 43, 58-77.
20. Page, R.D.M., 1994b. Parallel "phylogenies" - reconstructing the history of host-parasite assemblages. Cladistics 10, 155-173.
21. Paterson, A.M., Banks, J., 2001. Analytical approaches to measuring cospeciation of host and parasites: through a glass, darkly. Int. J. Parasitol. 31, 1012-1022.
22. Paterson, A.M., Gray, RD., 1997. Host-parasite co-speciation, host switching, and missing the boat. In: Clayton, D.H., Moore, J. (Eds.), Host-Parasite Evolution: General Principles and Avian Models. Oxford University Press, Oxford, pp. 236-250.
23. Paterson, A.M., Wallis, G.P., Wallis, L.J., Gray, R.D., 2000. Seabird and louse coevolution: complex histories revealed by 12S rRNA sequences and reconciliation analyses. Syst. Biol. 49, 383-399.
24. Ronquist, F., 1995. Reconstructing the history of host-parasite associations using generalized parsimony. Cladistics 11, 73-89.
25. Ronquist, F., 1998. Three-dimensional cost-matrix optimization and maximum cospeciation. Cladistics 14, 167-172.
26. Ronquist, F., Nylin, S., 1990. Process and pattern in the evolution of species associations. Syst. Zool. 39, 323-344.
27. Siddall, M.E., 1996. Phylogenetic covariance probability: confidence and historical associations. Syst. Biol. 45, 48-66.
28. Van Veller, M.G.P., Brooks, D.R., 2001. When simplicity is not parsimonious: a priori and a posteriori methods in historical biogeography. J. Biogeogr. 28, 1-12.
29. Van Veller, M.G.P., Kornet, D.J., Zandee, M., 2000. Methods in vicariance biogeography: assessment of the implementations of assumptions 0, 1, and 2. Cladistics 16, 319-345.
30. Wiley, E.O., 1988a. Parsimony analysis and vicariance biogeography. Syst. Zool. 37, 271-290.
31. Wiley, E.O., 1988b. Vicariance biogeography. Annu. Rev. Ecol. Syst. 19, 513-542.