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Volumn 43, Issue 2, 2002, Pages 264-283

Gossip is synteny: Incomplete gossip and the syntenic distance between genomes

Author keywords

Comparative genomics; Genome rearrangements; Incomplete gossip; Synthenic distance

Indexed keywords

COMPUTATIONAL COMPLEXITY; COMPUTATIONAL METHODS; MATHEMATICAL TRANSFORMATIONS; PROBLEM SOLVING; SET THEORY; TIME DOMAIN ANALYSIS;

EID: 0036591133     PISSN: 01966774     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0196-6774(02)00006-8     Document Type: Article
Times cited : (9)

References (37)
  • 1
    • 0030130366 scopus 로고    scopus 로고
    • Genome rearrangements and sorting by reversals
    • V. Bafna, P.A. Pevzner, Genome rearrangements and sorting by reversals, SIAM J. Comput. 25 (2) (1996) 272-289.
    • (1996) SIAM J. Comput. , vol.25 , Issue.2 , pp. 272-289
    • Bafna, V.1    Pevzner, P.A.2
  • 3
    • 0002721941 scopus 로고    scopus 로고
    • Sorting permutations by reversals and Eulerian cycle decompositions
    • A. Caprara, Sorting permutations by reversals and Eulerian cycle decompositions, SIAM J. Discrete Math. 12 (1) (1999) 91-110.
    • (1999) SIAM J. Discrete Math. , vol.12 , Issue.1 , pp. 91-110
    • Caprara, A.1
  • 5
    • 85031230303 scopus 로고    scopus 로고
    • (1 + ε)-approximation of sorting by reversals and transpositions
    • to appear
    • N. Eriksen, (1 + ε)-approximation of sorting by reversals and transpositions, Theoret. Comput. Sci., to appear.
    • Theoret. Comput. Sci.
    • Eriksen, N.1
  • 7
    • 0000840830 scopus 로고    scopus 로고
    • A 2-approximation algorithm for genome rearrangements by reversals and transpositions
    • Q.-P. Gu, S. Peng, I. Hal Sudborough, A 2-approximation algorithm for genome rearrangements by reversals and transpositions, Theoret. Comput. Sci. 210 (2) (1999) 327-339.
    • (1999) Theoret. Comput. Sci. , vol.210 , Issue.2 , pp. 327-339
    • Gu, Q.-P.1    Peng, S.2    Hal Sudborough, I.3
  • 8
    • 0029185212 scopus 로고
    • Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement
    • J.D. Kececioglu, D. Sankoff, Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement, Algorithmica 13 (1/2) (1995) 180-210.
    • (1995) Algorithmica , vol.13 , Issue.1-2 , pp. 180-210
    • Kececioglu, J.D.1    Sankoff, D.2
  • 9
    • 0000320128 scopus 로고    scopus 로고
    • Polynomial-time algorithm for computing translocation distance between genomes
    • S. Hannenhalli, Polynomial-time algorithm for computing translocation distance between genomes. Discrete Appl. Math. 71 (1-3) (1996) 137-151.
    • (1996) Discrete Appl. Math. , vol.71 , Issue.1-3 , pp. 137-151
    • Hannenhalli, S.1
  • 10
    • 84878713670 scopus 로고    scopus 로고
    • Of mice and men: Algorithms for evolutionary distance between genomes with translocations
    • J.D. Kececioglu, R. Ravi, Of mice and men: Algorithms for evolutionary distance between genomes with translocations, in: 6th ACM-SIAM Symposium on Discrete Algorithms, 1995, pp. 604-613.
    • 6th ACM-SIAM Symposium on Discrete Algorithms, 1995 , pp. 604-613
    • Kececioglu, J.D.1    Ravi, R.2
  • 12
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genomen
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium, Initial sequencing and analysis of the human genomen, Nature 409 (2001) 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 14
    • 0035099929 scopus 로고    scopus 로고
    • Synteny of orthologous genes in mammals, snake, fly, nematode, and fission yeast
    • Z. Trachtulec, J. Forejt, Synteny of orthologous genes in mammals, snake, fly, nematode, and fission yeast, Mammalian Genome 12 (3) (2001) 227-231.
    • (2001) Mammalian Genome , vol.12 , Issue.3 , pp. 227-231
    • Trachtulec, Z.1    Forejt, J.2
  • 15
    • 0034976804 scopus 로고    scopus 로고
    • Conserved vertebrate chromosome segments in the large salamander genome
    • S.R. Voss, J.J. Smith, D.M. Gardiner, D.M. Parichy, Conserved vertebrate chromosome segments in the large salamander genome, Genetics 158 (2) (2001) 735-746.
    • (2001) Genetics , vol.158 , Issue.2 , pp. 735-746
    • Voss, S.R.1    Smith, J.J.2    Gardiner, D.M.3    Parichy, D.M.4
  • 16
    • 0002617971 scopus 로고    scopus 로고
    • High frequency of inversions during eukaryote gene order evolution
    • in: D. Sankoff, J.H. Nadeau (Eds.); Kluwer Academic
    • A. McLysaght, C. Seoighe, K.H. Wolfe, High frequency of inversions during eukaryote gene order evolution, in: D. Sankoff, J.H. Nadeau (Eds.), Comparative Genomics, Kluwer Academic, 2000, pp. 47-58.
    • (2000) Comparative Genomics , pp. 47-58
    • McLysaght, A.1    Seoighe, C.2    Wolfe, K.H.3
  • 17
    • 0035101024 scopus 로고    scopus 로고
    • How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila
    • J.M. Ranz, F. Casals, A. Ruiz, How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila, Genome Res. 11 (2) (2001) 230-239.
    • (2001) Genome Res. , vol.11 , Issue.2 , pp. 230-239
    • Ranz, J.M.1    Casals, F.2    Ruiz, A.3
  • 19
    • 0029993075 scopus 로고    scopus 로고
    • Parametric genome rearrangement
    • M. Blanchette, T. Kunisawa, D. Sankoff, Parametric genome rearrangement, Gene 172 (1) (1996) GC11-GC17.
    • (1996) Gene , vol.172 , Issue.1
    • Blanchette, M.1    Kunisawa, T.2    Sankoff, D.3
  • 20
    • 0030884401 scopus 로고    scopus 로고
    • Synteny conservation and chromosome rearrangements during mammalian evolution
    • J. Ehrlich, D. Sankoff, J.H. Nadeau, Synteny conservation and chromosome rearrangements during mammalian evolution, Genetics 147 (1) (1997) 289-296.
    • (1997) Genetics , vol.147 , Issue.1 , pp. 289-296
    • Ehrlich, J.1    Sankoff, D.2    Nadeau, J.H.3
  • 21
    • 0001373285 scopus 로고    scopus 로고
    • Conserved synteny as a measure of genomic distance
    • D. Sankoff, J.H. Nadeau, Conserved synteny as a measure of genomic distance, Discrete Appl. Math. 71 (1-3) (1996) 247-257.
    • (1996) Discrete Appl. Math. , vol.71 , Issue.1-3 , pp. 247-257
    • Sankoff, D.1    Nadeau, J.H.2
  • 24
    • 0034923397 scopus 로고    scopus 로고
    • On the structure of syntenic distance
    • D. Liben-Nowell, On the structure of syntenic distance, J. Comput. Biol. 8 (1) (2001) 53-67.
    • (2001) J. Comput. Biol. , vol.8 , Issue.1 , pp. 53-67
    • Liben-Nowell, D.1
  • 25
    • 0013223032 scopus 로고    scopus 로고
    • The syntenic diameter of the space of n-chromosome genomes
    • in: D. Sankoff, J.H. Nadeau (Eds.); Kluwer Academic
    • J. Kleinberg, D. Liben-Nowell, The syntenic diameter of the space of n-chromosome genomes, in: D. Sankoff, J.H. Nadeau (Eds.), Comparative Genomics, Kluwer Academic, 2000, pp. 185-197.
    • (2000) Comparative Genomics , pp. 185-197
    • Kleinberg, J.1    Liben-Nowell, D.2
  • 27
    • 0141991876 scopus 로고    scopus 로고
    • Further thoughts on the syntenic distance between genomes
    • submitted
    • N. Pisanti, M.-F. Sagot, Further thoughts on the syntenic distance between genomes, submitted.
    • Pisanti, N.1    Sagot, M.-F.2
  • 28
    • 0001569845 scopus 로고
    • Gossips and telephones
    • B. Baker, R. Shostak, Gossips and telephones, Discrete Math. 2 (3) (1972) 191-193.
    • (1972) Discrete Math. , vol.2 , Issue.3 , pp. 191-193
    • Baker, B.1    Shostak, R.2
  • 29
    • 0002598391 scopus 로고
    • A problem with telephones
    • R.T. Bumby, A problem with telephones, SIAM J. Alg. Discrete Meth. 2 (1) (1981) 13-18.
    • (1981) SIAM J. Alg. Discrete Meth. , vol.2 , Issue.1 , pp. 13-18
    • Bumby, R.T.1
  • 31
    • 0013224242 scopus 로고    scopus 로고
    • Spreading gossip efficiently
    • C.A.J. Hurkens, Spreading gossip efficiently, Nieuw Arch, Wisk. 5/1 (2) (2000) 208-210.
    • (2000) Nieuw Arch, Wisk. , vol.5 , Issue.1-2 , pp. 208-210
    • Hurkens, C.A.J.1
  • 32
    • 0001152876 scopus 로고
    • On a telephone problem
    • R. Tijdeman, On a telephone problem, Nieuw Arch. Wisk. 19 (3) (1971) 188-192.
    • (1971) Nieuw Arch. Wisk. , vol.19 , Issue.3 , pp. 188-192
    • Tijdeman, R.1
  • 33
    • 84986959281 scopus 로고
    • A survey of gossiping and broadcasting in communication networks
    • S. Hedetniemi, S. Hedetniemi, A. Liestman, A survey of gossiping and broadcasting in communication networks, Networks 18 (4) (1988) 319-349.
    • (1988) Networks , vol.18 , Issue.4 , pp. 319-349
    • Hedetniemi, S.1    Hedetniemi, S.2    Liestman, A.3
  • 34
    • 38249009493 scopus 로고
    • Set to set broadcasting in communication networks
    • H.-M. Lee, G.J. Chang, Set to set broadcasting in communication networks, Discrete Appl. Math. 40 (3) (1992) 411-421.
    • (1992) Discrete Appl. Math. , vol.40 , Issue.3 , pp. 411-421
    • Lee, H.-M.1    Chang, G.J.2
  • 35
    • 84987012280 scopus 로고
    • Generalizations of broadcasting and gossiping
    • D. Richards, A.L. Liestman, Generalizations of broadcasting and gossiping, Networks 18 (1988) 125-138.
    • (1988) Networks , vol.18 , pp. 125-138
    • Richards, D.1    Liestman, A.L.2
  • 36
    • 0013320881 scopus 로고    scopus 로고
    • The partial gossiping problem
    • G.J. Chang, Y.-J. Tsay, The partial gossiping problem, Discrete Math. 148 (1-3) (1996) 9-14.
    • (1996) Discrete Math. , vol.148 , Issue.1-3 , pp. 9-14
    • Chang, G.J.1    Tsay, Y.-J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.