-
1
-
-
0025183708
-
A basic local alignment search tool
-
S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman, "A basic local alignment search tool," Journal of Molecular Biology, vol. 215, pp. 403-410, 1990.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman, "Gapped blast and psi-blast: A new generation of protein database search programs," Nucleic Acids Research, vol. 25, no. 17, pp. 3389-3402, 1997.
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0033976454
-
Genbank
-
D.A. Benson, I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, B.A. Rapp, and D.L. Wheeler, "Genbank," Nucleic Acids Research, vol. 28, no. 1, pp. 15-18, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 15-18
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Rapp, B.A.5
Wheeler, D.L.6
-
4
-
-
84957887512
-
Three complementary approaches to parallelization of local BLAST service on workstation clusters
-
Proceedings of the 5th International Conference on Parallel Computing Technologies (PaCT)
-
R.C. Braun, K.T. Pedretti, T.L. Casavant, T.E. Scheetz, C.L. Birkett, and C.A. Roberts, "Three complementary approaches to parallelization of local BLAST service on workstation clusters," in Proceedings of the 5th International Conference on Parallel Computing Technologies (PaCT), Lecture Notes in Computer Science (LNCS), vol. 1662, 1999, pp. 271-282.
-
(1999)
Lecture Notes in Computer Science (LNCS)
, vol.1662
, pp. 271-282
-
-
Braun, R.C.1
Pedretti, K.T.2
Casavant, T.L.3
Scheetz, T.E.4
Birkett, C.L.5
Roberts, C.A.6
-
6
-
-
0013428691
-
-
Technical Report TR97-05, University of Minnesota, Minneapolis, CS Dept, January
-
E.H-h. Chi, E. Shoop, J. Carlis, E. Retzel, and J. Riedl, "Efficiency of shared-memory multiprocessors for a genetic sequence similarity search algorithm," Technical Report TR97-05, University of Minnesota, Minneapolis, CS Dept, January 1997.
-
(1997)
Efficiency of Shared-Memory Multiprocessors for a Genetic Sequence Similarity Search Algorithm
-
-
Chi, E.H.-H.1
Shoop, E.2
Carlis, J.3
Retzel, E.4
Riedl, J.5
-
9
-
-
0030462897
-
Parallel hardware for sequence comparison and alignment
-
R. Hughey, "Parallel hardware for sequence comparison and alignment," CABIOS, vol. 12, no. 6, pp. 473-479, 1996.
-
(1996)
CABIOS
, vol.12
, Issue.6
, pp. 473-479
-
-
Hughey, R.1
-
10
-
-
84944328392
-
A database index to large biological sequences
-
E. Hunt, M.P. Atkinson, and R.W. Irving, "A database index to large biological sequences," in Proceedings of the International Conference on Very Large Data Bases (VLDB), 2001, pp. 139-148.
-
(2001)
Proceedings of the International Conference on Very Large Data Bases (VLDB)
, pp. 139-148
-
-
Hunt, E.1
Atkinson, M.P.2
Irving, R.W.3
-
12
-
-
0028941606
-
Implementations of BLAST for parallel computers
-
A. Julich, "Implementations of BLAST for parallel computers," Bioinformatics, vol. 11, pp. 3-6, 1995.
-
(1995)
Bioinformatics
, vol.11
, pp. 3-6
-
-
Julich, A.1
-
15
-
-
0021919480
-
Rapid and sensitive protein similarity search
-
D.J. Lipman and W.R. Pearson, "Rapid and sensitive protein similarity search," Science, vol. 227, pp. 1435-1441, 1985.
-
(1985)
Science
, vol.227
, pp. 1435-1441
-
-
Lipman, D.J.1
Pearson, W.R.2
-
16
-
-
0013332993
-
Whole genome alignment using a multithreaded parallel implementation
-
W.S. Martins, J.B. del Cuvillo, W. Cui, and G.R. Gao, "Whole genome alignment using a multithreaded parallel implementation," in Proceedings of the Symposium on Computer Architecture and High Performance Computing (SBAC), 2001, pp. 1-8.
-
(2001)
Proceedings of the Symposium on Computer Architecture and High Performance Computing (SBAC)
, pp. 1-8
-
-
Martins, W.S.1
Del Cuvillo, J.B.2
Cui, W.3
Gao, G.R.4
-
17
-
-
0035228035
-
A multithreaded parallel implementation of a dynamic programming algorithm for sequence comparison
-
W.S. Martins, J.B. del Cuvillo, F.J. Useche, K.B. Theobald, and G.R. Gao, "A multithreaded parallel implementation of a dynamic programming algorithm for sequence comparison," in Proceedings of the Pacific Symposium on Biocomputing, 2001, pp. 311-322.
-
(2001)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 311-322
-
-
Martins, W.S.1
Del Cuvillo, J.B.2
Useche, F.J.3
Theobald, K.B.4
Gao, G.R.5
-
19
-
-
0026538781
-
Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison
-
P.L. Miller, P.M. Nadkarni, and W.R. Pearson, "Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison," Bioinformatics, vol. 8, pp. 167-175, 1992.
-
(1992)
Bioinformatics
, vol.8
, pp. 167-175
-
-
Miller, P.L.1
Nadkarni, P.M.2
Pearson, W.R.3
-
20
-
-
0025977511
-
Parallel computation and FASTA: Confronting the problem of parallel database search for a fast sequence comparison algorithm
-
P.L. Miller, P.M. Nadkarni, and N.M. Carriero, "Parallel computation and FASTA: Confronting the problem of parallel database search for a fast sequence comparison algorithm," Bioinformatics, vol. 7, pp. 71-78, 1991.
-
(1991)
Bioinformatics
, vol.7
, pp. 71-78
-
-
Miller, P.L.1
Nadkarni, P.M.2
Carriero, N.M.3
-
21
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two sequences
-
S.B. Needleman and C.D. Wunsch, "A general method applicable to the search for similarities in the amino acid sequence of two sequences," Journal of Molecular Biology, vol. 48, pp. 443-453, 1970.
-
(1970)
Journal of Molecular Biology
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
25
-
-
0033828959
-
Conceptual modeling of genomic information
-
N.W. Patton, S.A. Khan, A. Hayes, F. Moussoni, A. Brass, K. Eilbeck, C.A. Goble, S.J. Hubbard, and S.G. Oliver, "Conceptual modeling of genomic information," Bioinformatics, vol. 16, no. 6, pp. 548-557, 2000.
-
(2000)
Bioinformatics
, vol.16
, Issue.6
, pp. 548-557
-
-
Patton, N.W.1
Khan, S.A.2
Hayes, A.3
Moussoni, F.4
Brass, A.5
Eilbeck, K.6
Goble, C.A.7
Hubbard, S.J.8
Oliver, S.G.9
-
28
-
-
0035312251
-
ParAlign: A parallel sequence alignment algorithm for rapid and sensitive database searches
-
T. Rognes, "ParAlign: A parallel sequence alignment algorithm for rapid and sensitive database searches," Nucleic Acids Research, vol. 29, no. 7, pp. 1647-1652, 2001.
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.7
, pp. 1647-1652
-
-
Rognes, T.1
-
30
-
-
0019887799
-
Identification of common molecular subsequence
-
T.F. Smith and M.S. Waterman, "Identification of common molecular subsequence," Journal of Molecular Biology, vol. 147, pp. 195-197, 1981.
-
(1981)
Journal of Molecular Biology
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
31
-
-
0035098963
-
A classification of tasks in bioinformatics
-
R. Stevens, C. Goble, P. Baker, and A. Brass, "A classification of tasks in bioinformatics," Bioinformatics, vol. 17, no. 2, pp. 180-188, 2001.
-
(2001)
Bioinformatics
, vol.17
, Issue.2
, pp. 180-188
-
-
Stevens, R.1
Goble, C.2
Baker, P.3
Brass, A.4
-
32
-
-
84923704551
-
-
Tera-BLAST, TimeLogic Inc, available at http://www.timelogic.com.
-
Tera-BLAST
-
-
-
33
-
-
0027997806
-
On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures
-
O. Trelles-Salazar, E.L. Zapata, and J.M. Carazo, "On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures," Bioinformatics, vol. 10, pp. 509-511, 1994.
-
(1994)
Bioinformatics
, vol.10
, pp. 509-511
-
-
Trelles-Salazar, O.1
Zapata, E.L.2
Carazo, J.M.3
-
34
-
-
84923734838
-
-
TurboBLAST, Turbo Genomics Inc., available at http://turbogenomics.com.
-
TurboBLAST
-
-
-
35
-
-
0032024312
-
Parallel computation in biological sequence analysis
-
T.K. Yap, O. Frieder, and R.L. Martino, "Parallel computation in biological sequence analysis," IEEE Trans-actions on Parallel and Distributed Systems, vol. 9, no. 3, pp. 283-294, 1998.
-
(1998)
IEEE Trans-Actions on Parallel and Distributed Systems
, vol.9
, Issue.3
, pp. 283-294
-
-
Yap, T.K.1
Frieder, O.2
Martino, R.L.3
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