Conflicting molecular phylogenies of European long-eared bats (Plecotus) can be explained by cryptic diversity

Molecular Phylogenetics and Evolution

Volumn 25, Issue 3, 2002, Pages 557-566

  Kiefer, A ^a   Mayer, F ^b   Kosuch, J ^a   Von Helversen, O ^b   Veith, M ^a  

^a JOHANNES GUTENBERG UNIVERSITY   (Germany)

^b UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

Author keywords

Altitudinal niche separation; Cryptic diversity; Molecular clock; Partition homogeneity; Phylogeny; Plecotus

Indexed keywords

PLECOTUS; PLECOTUS AURITUS; PLECOTUS AUSTRIACUS;

INSECT PROTEIN; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RNA 16S;

ANIMAL; ARTICLE; BAT; CLASSIFICATION; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; PHYLOGENY; TIME;

ANIMALS; CHIROPTERA; EVOLUTION, MOLECULAR; GEOGRAPHY; INSECT PROTEINS; NADH DEHYDROGENASE; PHYLOGENY; POLYMORPHISM, GENETIC; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TIME FACTORS;

EID: 0036436267     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(02)00299-3     Document Type: Article

References (58)

1. Aellen, V., 1971. La chauve-souris Plecotus austriacus (Fischer) en Suisse. Act. d. 4e Con. suisse de Spel., 167-172.
2. Arlettaz, R., Lugon, A., Sierro, A., Desfayes, M., 1997. Les chauves-souris du Valais (Suisse): Statut, zoogéograhie et écologie. Le Rhinolophe 12, 1-42.
3. Barratt, E.M., Deaville, R., Burland, T.M., Bruford, M.W., Jones, G., Racey, P.A., Wayne, R.K., 1997. DNA answers the call of the pipistrelle bat species. Nature 387, 138-139.
4. Bauer, K., 1957. Zur kenntnis der fledermäuse spaniens. Bonn. Zool. Beitr. 7, 296-319.
5. Bauer, K., 1960. Die säugetiere des neusiedlersee-gebietes (Österreich). Bonn. Zool. Beitr. 11, 217-324.
6. Bull, J.J., Huelsenbeck, J.P., Cunningham, D.L., Swofford, D.L., Waddell, P.J., 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42, 384-397.
7. Burmester, T., 2001. Molecular evolution of the arthropod hemocyanin superfamily. Mol. Biol. Evol. 18, 184-195.
8. Cao, Y., Adachi, J., Hasegawa, M., 1998. Comment on the Quartet Puzzling method for finding maximum-likelihood tree topologies. Mol. Biol. Evol. 15, 87-89.
9. Castella, V., Ruedi, M., Excoffer, L., Ibanez, C., Arlettaz, R., Hausser, J., 2000. Is the Gibraltar Strait a barrier to gene flow for the bat Myotis myotis (Chiroptera: Vespertilionidae)? Mol. Ecol. 9, 1761-1772.
10. Deuchler, K., 1964. Neue fledermausfunde aus graubünden. Rev. Suisse Zool. 71, 559-560.
11. Dulic, B., 1980. Morphological characteristics and distribution of Plecotus auritus and Plecotus austriacus in some regions of Yugoslavia. In: Wilson, D.E., Gardner, A.L. (Eds.), Proc. 5th Int. Bat Res. Conf., pp. 151-161.
12. Farris, J.S., Källersjö, M., Kluge, A.G., Bult, C., 1994. Testing significance of congruence. Cladistics 10, 315-320.
13. Felsenstein, J., 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
14. García-Machado, E., Pempera, M., Dennebouy, N., Oliva-Suarez, M., Mounolou, J.-C., Monnerot, M., 1999. Mitochondrial genes collectively suggest the paraphyly of Crustacea with respect to Insecta. J. Mol. Evol. 49, 142-149.
15. Grant, P.R., 1986. Ecology and Evolution of Darwin's Finches. Princeton.
16. Haring, E., Herzig-Straschil, B., Spitzenberger, F., 2000. Phylogenetic analysis of alpine voles of the M. multiplex complex using mitochondrial control region. J. Zool. Syst. Evol. Res. 38, 231-238.
17. Hedges, S.B., 1992. The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Mol. Biol. Evol. 9, 366-369.
18. Huelsenbeck, J.P., Crandall, K.A., 1997. Phylogeny estimation and hypothesis testing using maximum likelihood. Ann. Rev. Ecol. Syst. 28, 437-466.
19. Huelsenbeck, J.P., Hillis, D.M., 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42, 247-264.
20. Huelsenbeck, J.P., Bull, J.J., Cunningham, C.W., 1996. Combining data in phylogenetic analysis. TREE 11, 152-158.
21. Huelsenbeck, J.P., Ronquist, F.R., 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
22. Huelsenbeck, J.P., Ronquist, F., Nielsen, R., Bollback, J.P., 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294, 2310-2314.
23. Jones, G.C., Avise, J.C., 1998. A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol. Biol. Evol. 15, 1481-1490.
24. Kallersjö, M., Farris, J.S., Kluge, A.G., Bult, C., 1992. Skewness and permutation. Cladistics 8, 275-287.
25. Lockhart, P.J., Steel, M.A., Hendy, M.D., Penny, D., 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612.
26. Mayer, F., von Helversen, O., 2001. Cryptic diversity in European bats. Proc. R. Soc. Lond. Ser. B, Biol. Sci. 268, 1825-1832.
27. Müller, E., 1993. Fledermäuse in Baden-Württemberg II. Beih. Veröff. Naturschutz Landschaftspflege Bad.-Württ. 75, 9-96.
28. Nikaido, M., Kawai, K., Cao, Y., Harada, M., Tomita, S., Okada, N., Hasegawa, M., 2001. Maximum likelihood analysis of the complete mitochondrial genomes of eutherians and a reevaluation of the phylogeny of bats and insectivores. J. Mol. Evol. 53, 508-516.
29. Palumbi, S., Martin, A., Romano, S., McMillan, W.O., Stice, L., Grabowski, G., 1991. The simple fool's guide to PCR. Version 2. Honolulu, Hawai.
30. De Paz, O., 1994. Systematic position of Plecotus (Geoffroy, 1818) from the Iberian Peninsula (Mammalia: Chiroptera). Mammalia 58, 423-432.
31. Pesole, G., Gissi, C., De Chirico, A., Saccone, C., 1999. Nucleotide substitution rate of mammalian mitochondrial genomes. J. Mol. Evol. 48, 427-434.
32. Posada, D., Crandall, K.A., 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14, 817-818.
33. Pumo, D.E., Finamore, P.S., Franek, W.R., Phillips, C.J., Tarzami, S., Balzarano, 1998. Complete mitochondrial genome of a neotropical fruit bat, Artibeus jamaicensis, and a new hypothesis of the relationships of bats to other eutherian mammals. J. Mol. Evol. 47, 709-717.
34. Rannala, B., Yang, Z., 1996. Probability distribution of molecular evolutionary trees: A new method for phylogenetic inference. J. Mol. Evol. 43, 304-311.
35. Rice, W.R., 1989. Analyzing tables of statistical tests. Evolution 43, 223-225.
36. Rodríguez, F., Oliver, J.F., Marín, A., Medina, J.R., 1990. The general stochastic model of nucleotide substitution. J. Theoret. Biol. 142, 485-501.
37. Ruedi, M., Mayer, F., 2001. Molecular systematics of bats of the genus Myotis (Vespertilionidae) suggests deterministic ecomorphological convergences. Mol. Phylogenet. Evol. 21, 436-448.
38. Saitou, N., Nei, M., 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
39. Schluter, D., 2000. The ecology of adaptive radiation. In: Oxford Series in Ecology and Evolution. Oxford University Press, Oxford, 288 p.
40. Schmidt, H.A., Strimmer, K., Vingron, M., von Haeseler, A., 2000. TREE-PUZZLE, version 5.0. Heidelberg/Oxford/Leipzig.
41. Spitzenberger, F., 1993. Angaben zur sommerverbreitung, best-andsgrößen und siedlungsdichten einiger gebäudebewohnender fledermausarten kärntens. Myotis 31, 69-101.
42. Spitzenberger, F., Pialek, J., Haring, E., 2001. Systematics of the genus Plecotus (Mammalia, Vespertilionidae) in Austria based on morphometric and molecular investigations. Folia Zool. 50, 161-172.
43. Strelkov, P.P., 1988. Brown (Plecotus auritus) and Grey (P. austriacus) bats (Chiroptera, Vespertilionidae) in the USSR Communication I. Zool. Sh. 67, 90-101.
44. Strelkov, P.P., 1989. Brown (Plecotus auritus) and Grey (P. austriacus) bats (Chiroptera, Vespertilionidae) in the USSR Communication II. Zool. Sh. 67, 287-292.
45. Strimmer, K., von Haeseler, A., 1996. Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13, 964-969.
46. Stutz, H.-P., 1989. Die höhenverteilung der wochenstuben einiger ausgewählter schweizerischer fledermausarten (Mammalia, Chiroptera). Rev. Sui. Zool. 96, 651-662.
47. Swofford, D.L., 2001. Paup*: Phylogenetic analysis using parsimony (and other methods), version 4.08b. Sinauer Associates, Sunderland/Massachusetts.
48. Tamura, K., Nei, M., 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzee. Mol. Biol. Evol. 10, 512-526.
49. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24, 4876-4882.
50. Wägele, J.W., Erikson, T., Lockhart, P., Misof, B., 1999. The Ecdysozoa: Artefact or monophylum? J. Zool. Syst. Evol. Res. 37, 211-223.
51. Whelan, S., Liò, P., Goldman, N., 2001. Molecular phylogenetics: State-of-the-art methods for looking into the past. Trends Genet. 17, 262-272.
52. Wolfe, K.H., Sharp, P.M., Li, W.-H., 1989. Mutation rates differ among regions of the mammalian genome. Nature 337, 283-285.
53. Von Helversen, O., 1989. Bestimmungsschlüssel für die europäischen fledermäuse nach äußeren merkmalen. Myotis 27, 41-60.
54. Von Helversen, O., Esche, M., Kretzschmar, F., Boschert, M., 1987. Die fledermäuse südbadens. Mitt. Bad. Landesv. Naturk. Naturs. (N.F.) 14, 409-475.
55. Von Helversen, O., Heller, K.-G., Mayer, F., Nemeth, A., Volleth, M., Gombköto, P., 2001. Cryptic mammalian species: A new species of whiskered bat (Myotis alcathoe n. sp.) in Europe. Naturwissenschaften 88, 217-223.
56. Yoder, A.D., Irwin, J.A., Payseur, B.A., 2001. Failure of the ILD to determine data combinability for slow loris phylogeny. Syst. Biol. 50, 408-424.
57. Zardoya, R., Meyer, A., 1998. Complete mitochondrial genome suggests diapsid affinities of turtles. Proc. Natl. Acad. Sci. USA 95, 14226-14231.
58. Zingg, P.E., Maurizio, R., 1991. Die fledermäuse (Mammalia: Chiroptera) des Val Bregaglia/GR. Jb. Nat. Ges. Graubünden 106, 43-88.