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Volumn 42, Issue 1, 2002, Pages 58-63

Rapid evaluation of molecular shape similarity index using pairwise calculation of the nearest atomic distances

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC DISTANCES; MOLECULAR SHAPES;

EID: 0036429879     PISSN: 00952338     EISSN: None     Source Type: Journal    
DOI: 10.1021/ci010068d     Document Type: Article
Times cited : (12)

References (24)
  • 1
    • 0001202274 scopus 로고    scopus 로고
    • Explicit calculation of 3D molecular similarity
    • Good, A.C.; Richards, W.G. Explicit calculation of 3D molecular similarity. Perspect. Drug Discov. Design 1998, 9/11, 321-338.
    • (1998) Perspect. Drug Discov. Design , vol.9-11 , pp. 321-338
    • Good, A.C.1    Richards, W.G.2
  • 2
    • 0023751431 scopus 로고
    • Comparative molecular field analysis (CoMFA). 1: Effect of shape on binding of steroids to carrier proteins
    • Cramer III, R.D.; Patterson, D.E.; Bunce, J.D. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 1988, 110, 5959-5967.
    • (1988) J. Am. Chem. Soc. , vol.110 , pp. 5959-5967
    • Cramer Iii, R.D.1    Patterson, D.E.2    Bunce, J.D.3
  • 3
    • 0027944195 scopus 로고
    • Molecular similarity indices in a comparative analysis (CoMSIA) of drag molecules to correlate and predict their biological activity
    • Klebe, G.; Abraham, U.; Mietzner, T. Molecular similarity indices in a comparative analysis (CoMSIA) of drag molecules to correlate and predict their biological activity. J. Med. Chem. 1994, 37, 4130-4146.
    • (1994) J. Med. Chem. , vol.37 , pp. 4130-4146
    • Klebe, G.1    Abraham, U.2    Mietzner, T.3
  • 4
    • 0033022163 scopus 로고    scopus 로고
    • Comparative molecular similarity index analysis (CoMSIA) to study hydrogen-bonding properties and to score combinatorial libraries
    • Klebe, G.; Abraham, U. Comparative molecular similarity index analysis (CoMSIA) to study hydrogen-bonding properties and to score combinatorial libraries. J. Comput. Aided Mol. Des. 1999, 13, 1-10.
    • (1999) J. Comput. Aided Mol. Des. , vol.13 , pp. 1-10
    • Klebe, G.1    Abraham, U.2
  • 5
    • 84987067987 scopus 로고
    • How similar is a molecule to another? An electron density measure of similarity between two molecular structures
    • Carbó, R.; Leyda, L.; Arnau, M. How similar is a molecule to another? An electron density measure of similarity between two molecular structures. Int. J. Quantum Chem. 1980, XVII, 1185-1189.
    • (1980) Int. J. Quantum Chem. , vol.17 , pp. 1185-1189
    • Carbó, R.1    Leyda, L.2    Arnau, M.3
  • 6
    • 84987111059 scopus 로고
    • LCAO-MO similarity measures and taxonomy
    • Carbó, R.; Domingo, L. LCAO-MO similarity measures and taxonomy. Int. J. Quantum Chem. 1987, XXXII, 517-545.
    • (1987) Int. J. Quantum Chem. , vol.32 , pp. 517-545
    • Carbó, R.1    Domingo, L.2
  • 7
    • 0001277347 scopus 로고    scopus 로고
    • Quantum Molecular Similarity Measures (QMSM) and the Atomic Shell Approximation (ASA)
    • Carbó-Dorca, R., Mezey, P.G., Eds.; JAI Press: Greenwich, CT
    • Constans, P.; Amat, L.; Fradera, X.; Carbó-Dorca, R. Quantum Molecular Similarity Measures (QMSM) and the Atomic Shell Approximation (ASA). In Advances in Molecular Similarity; Carbó-Dorca, R., Mezey, P.G., Eds.; JAI Press: Greenwich, CT, 1996; Vol. 1, pp 187-211.
    • (1996) Advances in Molecular Similarity , vol.1 , pp. 187-211
    • Constans, P.1    Amat, L.2    Fradera, X.3    Carbó-Dorca, R.4
  • 8
    • 0000083483 scopus 로고    scopus 로고
    • Quantum similarity measures under atomic shell approximation: First-order density fitting using elementary Jacobi rotations
    • Amat, L.; Carbó-Dorca, R. Quantum similarity measures under atomic shell approximation: first-order density fitting using elementary Jacobi rotations. J. Comput. Chem. 1997, 18, 2023-2039.
    • (1997) J. Comput. Chem. , vol.18 , pp. 2023-2039
    • Amat, L.1    Carbó-Dorca, R.2
  • 9
    • 0001354298 scopus 로고    scopus 로고
    • Molecular electronic density fitting using elementary Jacobi rotations under atomic shell approximation
    • Amat, L.; Carbó-Dorca, R. Molecular electronic density fitting using elementary Jacobi rotations under atomic shell approximation. J. Chem. Inf. Comput. Sci. 2000, 40, 1188-1198.
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 1188-1198
    • Amat, L.1    Carbó-Dorca, R.2
  • 11
    • 37049068275 scopus 로고
    • A semiempirical method for calculating molecular similarity
    • Hodgkin, E.E.; Richards, W.G. A semiempirical method for calculating molecular similarity. J. Chem. Soc., Chem. Commun. 1986, 17, 1342-1344.
    • (1986) J. Chem. Soc., Chem. Commun. , vol.17 , pp. 1342-1344
    • Hodgkin, E.E.1    Richards, W.G.2
  • 12
    • 84987090159 scopus 로고
    • Molecular similarity based on electrostatic potential and electric field
    • Hodgkin, E.E.; Richards, W.G. Molecular Similarity Based on Electrostatic Potential and Electric Field. Int. J. Quantum Chem. 1987, 14, 105-110.
    • (1987) Int. J. Quantum Chem. , vol.14 , pp. 105-110
    • Hodgkin, E.E.1    Richards, W.G.2
  • 13
    • 0025492823 scopus 로고
    • Molecular similarity: The introduction of flexible fitting
    • Burt, C.; Richards, W.G. Molecular similarity: the introduction of flexible fitting. J. Comput. Aided Mol. Des. 1990, 4, 231-238.
    • (1990) J. Comput. Aided Mol. Des. , vol.4 , pp. 231-238
    • Burt, C.1    Richards, W.G.2
  • 14
    • 84986468488 scopus 로고
    • The application of molecular similarity calculations
    • Burr, C.; Richards, W.G.; Huxley, P. The application of molecular similarity calculations. J. Comput. Chem. 1990, 11, 1139-1146.
    • (1990) J. Comput. Chem. , vol.11 , pp. 1139-1146
    • Burr, C.1    Richards, W.G.2    Huxley, P.3
  • 15
    • 84986467750 scopus 로고
    • Quantitative comparison of molecular electrostatic potentials for structure-activity studies
    • Richards, A.M. Quantitative comparison of molecular electrostatic potentials for structure-activity studies. J. Comput. Chem. 1991, 12, 959-969.
    • (1991) J. Comput. Chem. , vol.12 , pp. 959-969
    • Richards, A.M.1
  • 16
    • 0000902749 scopus 로고    scopus 로고
    • Calculation of structural similarity by the alignment of molecular electrostatic potentials
    • Thorner, D.A.; Wild, D.J.; Willett, P.; Wright, P.M. Calculation of structural similarity by the alignment of molecular electrostatic potentials. Perspect. Drug Discov. Design 1998, 9/11, 301-320.
    • (1998) Perspect. Drug Discov. Design , vol.9-11 , pp. 301-320
    • Thorner, D.A.1    Wild, D.J.2    Willett, P.3    Wright, P.M.4
  • 17
    • 33751385180 scopus 로고
    • Rapid evaluation of shape similarity using Gaussian function
    • Good, A.C.; G., R.W. Rapid evaluation of shape similarity using Gaussian function. J. Chem. Inf. Comput. Sci. 1993, 33, 112-116.
    • (1993) J. Chem. Inf. Comput. Sci. , vol.33 , pp. 112-116
    • Good, A.C.1
  • 18
    • 0026928584 scopus 로고
    • The calculation of molecular similarity: Alternative formulas, data manipulation and graphical display
    • Good, A.C. The calculation of molecular similarity: alternative formulas, data manipulation and graphical display. J. Mol. Graph. 1992, 10, 144-151, 162.
    • (1992) J. Mol. Graph. , vol.10 , pp. 144-151
    • Good, A.C.1
  • 19
    • 21244463552 scopus 로고    scopus 로고
    • Similarity searching in files of three-dimensional chemical structures: Identification of bioactive molecules
    • Drayton, S.K.; Edwards, K.; Jewell, N.; Turner, D.B.; Wild, D.J.; Willett, P.; M., W.P.; Simmons, K. Similarity searching in files of three-dimensional chemical structures: Identification of bioactive molecules. Internet J. Chem. at URL http://www.ijc.com/articles/1998v1/37.
    • Internet J. Chem.
    • Drayton, S.K.1    Edwards, K.2    Jewell, N.3    Turner, D.B.4    Wild, D.J.5    Willett, P.6    Simmons, K.7
  • 21
    • 44949267284 scopus 로고
    • An alternative method for the alignment of molecular structures: Maximizing electrostatic and steric overlap
    • Kearsley, S.K.; Smith, G.M. An alternative method for the alignment of molecular structures: maximizing electrostatic and steric overlap. Tetrahedron Comput. Methodol. 1990, 3, 615-633.
    • (1990) Tetrahedron Comput. Methodol. , vol.3 , pp. 615-633
    • Kearsley, S.K.1    Smith, G.M.2
  • 22
    • 0028722704 scopus 로고
    • Different approaches toward an automatic structural alignment of drug molecules: Applications to sterol mimics, thrombin and thermolysin inhibitors
    • Klebe, G.; Mietzner, T.; Weber, F. Different approaches toward an automatic structural alignment of drug molecules: applications to sterol mimics, thrombin and thermolysin inhibitors. J. Comput. Aided Mol. Des. 1994, 8, 751-778.
    • (1994) J. Comput. Aided Mol. Des. , vol.8 , pp. 751-778
    • Klebe, G.1    Mietzner, T.2    Weber, F.3
  • 23
    • 0000358516 scopus 로고    scopus 로고
    • Optimization of carbó molecular similarity index using gradient methods
    • McMahon, A.J.; King, P.L. Optimization of Carbó molecular similarity index using gradient methods. J. Comput. Chem. 1997, 18, 151-158.
    • (1997) J. Comput. Chem. , vol.18 , pp. 151-158
    • McMahon, A.J.1    King, P.L.2
  • 24
    • 0028984844 scopus 로고
    • Conformation of FK506 in X-ray structures of its complexes with human recombinant FKBP12 mutants
    • Atomic coordinates of FK-506 were extracted from 1BKF, which hydrogens were generated by Chem3D (CambridgeSoft Corporation)
    • Atomic coordinates of FK-506 were extracted from 1BKF, which hydrogens were generated by Chem3D (CambridgeSoft Corporation). Itoh, S.; DeCenzo, M.T.; Livingston, D.J.; Pearlman, D.A.; Navia, M.A. Conformation of FK506 in X-ray structures of its complexes with human recombinant FKBP12 mutants. Bioorg. Med. Chem. Lett. 1995, 5, 1983-1988.
    • (1995) Bioorg. Med. Chem. Lett. , vol.5 , pp. 1983-1988
    • Itoh, S.1    Decenzo, M.T.2    Livingston, D.J.3    Pearlman, D.A.4    Navia, M.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.