The complete genome sequence of gill-associated virus of Penaeus monodon prawns indicates a gene organisation unique among nidoviruses

Archives of Virology

Volumn 147, Issue 10, 2002, Pages 1977-1987

  Cowley, J A ^a   Walker, P J ^a  

^a CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; DECAPODA (CRUSTACEA); GENOME, VIRAL; GILLS; MOLECULAR SEQUENCE DATA; NIDOVIRALES; OPEN READING FRAMES; RNA, VIRAL;

ARBOVIRUS; DECAPODA (CRUSTACEA); GILL-ASSOCIATED VIRUS; INVERTEBRATA; MONODON; PENAEUS MONODON;

EID: 0036402693     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-002-0847-x     Document Type: Article

References (45)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
2. Binns MM, Boursnell ME, Cavanagh D, Pappin DJ, Brown TD (1985) Cloning and sequencing of the gene encoding the spike protein of the coronavirus IBV. J Gen Virol 66: 719-726
3. Boon JA, Snijder EJ, Locker JK, Horzinek MC, Rottier PJ (1991) Another triple-spanning envelope protein among intracellularly budding RNA viruses: the torovirus E protein. Virology 182: 655-663
4. Boonyaratpalin S, Supamattaya K, Kasornchandra J, Direkbusaracom S, Aekpanithanpong U, Chantanachookin C (1993) Non-occluded baculo-like virus, the causative agent of yellow-head disease in the black tiger shrimp (Penaeus monodon). Fish Path 28: 103-109
5. Cavanagh D (1995) The coronavirus surface glycoprotein. In: Siddell SG (ed) The Coronaviridae. Plenum Press, New York, pp. 73-113
6. Chantanachookin C, Boonyaratpalin S, Kasornchandra J, Sataporn D, Ekpanithanpong U, Supamataya K, Sriurairatana S, Flegel TW (1993) Histology and ultrastructure reveal a new granulosis-like virus in Penaeus monodon affected by yellow-head disease. Dis Aquat Org 17: 145-157
7. Cowley JA, Dimmock CM, Wongteerasupaya C, Boonsaeng V, Panyim S, Walker PJ (1999) Yellow head virus from Thailand and gill-associated virus from Australia are closely related but distinct prawn viruses. Dis Aquat Org 36: 153-157
8. Cowley JA, Dimmock CM, Spann KM, Walker PJ (2000a) Detection of Australian gill-associated virus (GAV) and lymphoid organ virus (LOV) of Penaeus monodon by RT-nested PCR. Dis Aquat Org 39: 159-167
9. Cowley JA, Dimmock CM, Spann KM, Walker PJ (2000b) Gill-associated virus of Penaeus monodon prawns: an invertebrate virus with ORF1a and ORF1b genes related to arteri- and coronaviruses. J Gen Virol 81: 1473-1484
10. Cowley JA, Dimmock CM, Walker PJ (2002) Gill-associated nidovirus of Penaeus monodon prawns transcribes 3′-coterminal subgenomic mRNAs that do not possess 5′-leader sequences. J Gen Virol 83: 927-935
11. De Groot RJ, Luytjes W, Horzinek MC, van der Zeijst BAM, Spaan WJM, Lenstra JA (1987a) Evidence for coiled-coil structure in the spike proteins of coronaviruses. J Mol Biol 196: 963-966
12. De Groot RJ, Maduro J, Lenstra JA, Horzinek MC, van der Zeijst BAM, Spaan WJM, (1987b) cDNA cloning and sequence analysis of the gene encoding the peplomer protein of feline infectious peritonitis virus. J Gen Virol 68: 2639-2646
13. De Vries AAF, Horzinek MC, Rottier PJM, de Groot RJ (1997) The genome organization of the Nidovirales: similarities and differences between arteri-, toro-, and coronaviruses. Seminars Virol 8: 33-47
14. Duckmanton LM, Tellier R, Liu P, Petric M (1998) Bovine torovirus: Sequencing of the structural genes and expression of the nucleocapsid protein of Breda virus. Virus Res 58: 83-96
15. Froussard P (1992) A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acids Res 20: 2900
16. Garoff H, Frischauf AM, Simons K, Lehrach H, Delius H (1980) Nucleotide sequence of cDNA coding for Semliki Forest virus membrane glycoproteins. Nature 288: 236-241
17. Godeny EK, Chen L, Kumar SN, Methven SL, Koonin EV, Brinton MA (1993) Complete genomic sequence and phylogenetic analysis of the lactate dehydrogenase elevating virus (LDV). Virology 194: 585-596
18. Hansen JE, Lund O, Tolstrup N, Gooley AA, Williams KL, Brunak S (1998) NetOglyc: Prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility. Glycoconjugate J 15: 115-130
19. Hashimoto K, Erdel S, Keränen S, Saraste J, Kääriäinen L (1981) Evidence for a separate signal sequence for the carboxy-terminal envelope glycoprotein E1 of Semliki Forest virus. J Virol 38: 34-40
20. Hofmann K, Stoffel W (1993) TMbase - A database of membrane spanning protein segments. Biol Chem Hoppe-Seyler 374: 166
21. Ihara T, Smith J, Dalrymple JM, Bishop DHL (1985) Complete sequence of the glycoproteins and M RNA of Punta Toro phlebovirus compared to those of Rift Valley fever virus. Virology 144: 246-259
22. Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132
23. Lai MMC (1990) Coronavirus: organization, replication and expression of genome. Ann Rev Microbiol 44: 303-333
24. Lai MMC, Cavanagh D (1997) The molecular biology of coronaviruses. Adv Virus Res 48: 1-100
25. Limsuwan C (1991) Handbook for cultivation of black tiger prawns. Tansetakit Co. Ltd, Bangkok (in Thai)
26. Lupas A, Van Dyke M, Stock J (1991) Predicting coiled coils from protein sequences. Science 252: 1162-1164
27. Nadala ECB, Tapay LM, Loh PC (1997)Yellow-head virus: A rhabdovirus-like pathogen of penaeid shrimp. Dis Aquat Org 31: 141-146
28. Nielsen H, Engelbrecht J, Brunak S, von Heijne G (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Engng 10: 1-6
29. Rice CM, Strauss JH (1981) Nucleotide sequence of the 26S mRNA of Sindbis virus and deduced sequence of the encoded virus structural protein. Proc Natl Acad Sci USA 78: 2062-2066
30. Rönnholm R, Pettersson RF (1987) Complete nucleotide sequence of the M RNA segment of Uukuniemi virus encoding the membrane glycoproteins G1 and G2. Virology 160: 191-202
31. Sambrook J, Fritsch EF, Maniatis T (1987) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, USA
32. Sawicki SG, Sawicki DL (1998) A new model for coronavirus transcription. Adv Exp Med Biol 440: 215-219
33. Siveter DJ, Williams M, Waloszek D (2001) A phosphatocopid crustacean with appendages from the Lower Cambrian. Science 293: 479-481
34. Snijder EJ, Den Boon JA, Spaan WJM, Verjans GMGM, Horzinek M (1989) Identification and primary structure of the gene encoding the Berne virus nucleocapsid protein. J Gen Virol 70: 3363-3370
35. Snijder EJ, Den Boon JA, Spaan WJM, Weiss M, Horzinek MC (1990) Primary structure and post-translational processing of the Berne virus peplomer protein. Virology 178: 355-363
36. Snijder EJ, Horzinek MC, Spaan WJ (1990) A 3′-coterminal nested set of independently transcribed mRNAs is generated during Berne virus replication. J Virol: 331-338
37. Snijder EJ, Meulenberg JJM (1998) The molecular biology of arteriviruses. J Gen Virol 79: 961-979
38. Sonnhammer ELL, von Heijne G, Krogh A (1998) A hidden Markov model for predicting transmembrane helices in protein sequences. In: Glasgow J, Littlejohn T, Major F, Lathrop R, Sankoff D, Sensen C (eds) Proc Sixth International Conference on Intelligent Systems for Molecular Biology. AAAI Press, California, pp 175-182
39. Spann KM, Vickers JE, Lester RJG (1995) Lymphoid organ virus of Penaeus monodon from Australia. Dis Aquat Org 23: 127-134
40. Spann KM, Cowley JA, Walker PJ, Lester RJG (1997) Gill-associated virus (GAV), a yellow head-like virus from Penaeus monodon cultured in Australia. Dis Aquat Org 31: 169-179
41. Tang KF-J, Lightner DV (1998) A yellow head virus probe: application to in situ hybridization and determination of its nucleotide sequence. Dis Aquat Org 35: 165-173
42. van Marle G, Dobbe JC, Gultyaev AP, Luytjes W, Spaan WJM, Snijder EJ (1999) Arterivirus discontinuous mRNA transcription is guided by base pairing between sense and antisense transcription-regulating sequences. Proc Natl Acad Sci USA 96: 12056-12061.
43. Walker PJ, Cowley JA, Spann KM, Hodgson RAJ, Hall MR, Withyachumnarnkul B (2001) Yellow head complex viruses: transmission cycles an topographical distribution in the Asia-Pacific region. In: Browdy CL, Jory DE (eds) The New Wave: Proc Special Session on Sustainable Shrimp Culture, Aquaculture 2001. The World Aquaculture Society, Baton Rouge, pp 227-237
44. Wang Y-C, Chang P-S (2000) Yellow head virus infection in the giant tiger prawn Penaeus monodon cultured in Taiwan. Fish Pathol 35: 1-10
45. Wongteerasupaya C, Sriurairatana S, Vickers JE, Akrajamorn A, Boonsaeng V, Panyim S, Tassanakajon A, Withyachumnarnjul B, Flegel TW (1995) Yellow-head virus of Penaeus monodon is an RNA virus. Dis Aquat Org 22: 45-50