Applications of nonequilibrium response spectroscopy to the study of channel gating. Experimental design and optimization

Journal of Theoretical Biology

Volumn 218, Issue 2, 2002, Pages 239-258

  Kargol, Armin ^a,b   Smith, Bryan ^a   Millonas, Mark M ^a  

^a Tulane University   (United States)

^b JAN KOCHANOWSKI UNIVERSITY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

POTASSIUM; POTASSIUM CHANNEL;

SPECTROSCOPY;

ARTICLE; CHANNEL GATING; DICHOTIC LISTENING; ELECTRIC POTENTIAL; EXPERIMENTAL DESIGN; INFORMATION; KINETICS; NOISE; NON EQUILIBRIUM RESPONSE SPECTROSCOPY; PARAMETRIC TEST; PRIORITY JOURNAL; SPECTROSCOPY; WAVEFORM;

EID: 0036399344     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.2002.3073     Document Type: Article

References (42)

1. Aldroubi, A. & Unser, M. (eds) (1996). Wavelets in Medicine and Biology. Boca Raton, New York, London, Tokyo: CRC Press.
2. Armstrong, C. M. (1981). Sodium channels and gating currents. Physiol. Rev. 61, 644-683.
3. Ball, F. G. & Rice, J. A. (1992). Stochastic models for ion channels: introduction and bibliography. Math. Biosci. 112, 189-206.
4. Cole, K. S. (1949). Dynamic electrical characteristics of the squid axon membrane. Arch. Sci. Physiol. 3, 253-258.
5. Colquhoun, D. & Hawkes, A. G. (1981). On the stochastic properties of single ion channels. Proc. R. Soc. London B 300, 2053-2235.
6. Colquhoun, D. & Hawkes, A. G. (1995). A Q-matric cookbook: how to write only one program to calculate the single-channel and macroscopic predictions for any kinetic mechanism. In: Single Channel Recording (Sakmann, B. & Neher, E., eds), pp. 589-633. New York: Plenum.
7. Colquhoun, D. & Sigworth, F. J. (1995). Fitting and statistical analysis of single-channel records. In: Single Channel Recording (Sakmann, B. & Neher, E., eds), pp. 483-587. New York: Plenum.
8. Daubechies, I. (1992). Ten Lectures on Wavelets. Philadelphia: SIAM.
9. Eyring, H. (1935). The activated complex in chemical reactions. J. Chem. Phys. 3, 107-115.
10. Fernandez, J. M., Bezanilla, F. & Taylor, R. E. (1982). Distribution and kinetics of membrane dielectric polarization II. Frequency domain studies of gating currents. J. Chem. Phys. 79, 41-67.
11. Fohlmeister, J. F. & Adelman, W. J. (1985a). Gating current harmonics I. Sodium channel activation in dynamics steady states. Biophys. J. 48, 375-390.
12. Fohlmeister, J. F. & Adelman, W. J. (1985b). Gating current harmonics II. Model simulation of axonal gating currents. Biophys. J. 48, 391-400.
13. Fohlmeister, J. F. & Adelman, W. J. (1986). Gating current harmonics III. Dynamic transients and steady states with intact sodium inactivation. Biophys. J. 50, 489-502.
14. Fohlmeister, J. F. & Adelman, W. J. (1987). Gating current harmonics IV. Dynamic properties of secondary activation kinetics in sodium channel gating. Biophys. J. 51, 375-390.
15. Hille, B. (1992). Ionic Channels of Excitable Membrane. Sunderland: Sinauer.
16. Hodgkin, A. L. & Huxley, A. F. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. J. Physiol. (London) 117, 500-544.
17. Hodgkin, A. L., Huxley, A. F. & Katz, B. (1949). Ionic currents underlying activity in the giant axon of the squid. Arch. Sci. Physiol. 3, 129-150.
18. Hodgkin, A. L., Huxley, A. F. & Katz, B. (1952). Measurement of current-voltage relations in the membrane of the giant axon of Loligo. J. Physiol. (London) 116, 424-448.
19. Horn, R. & Korn, S. J. (1989). Model selection: reliability and bias. Biophys. J. 55, 379-381.
20. Hoshi, T., Zagotta, W. N. & Aldrich, R. W. (1994). Shaker potassium channel gating. I: transition near the open state. J. Gen. Physiol. 103, 249-278.
21. Hubbard, B. B. (1998). The World According to Wavelets. Natick, MA: A.K.Peters.
22. van Kampen, N. G. (1992). Stochastic Process in Physics and Chemistry. Amsterdam: North-Holland Personal Library.
23. Kargol, A. & Millonas, M. M. (2000). Optimal waveform analysis of voltage sensitive ion channel gating kinetics (abstr.). Biophys. J. 78, 219a.
24. Kargol, A., Smith, B. & Millonas, M. M. (2001). Application of nonequilibrium response spectroscopy to the study of channel gating (abstr.). Biophys. J. 80, 442a.
25. Kienker, P. (1989). Equivalence of aggregated Markov models of ion-channel gating. Proc. R. Soc. London 236, 269-309.
26. Kramers, H. A. (1940). Brownian motion in a field of force and the diffusion model of chemical reactions. Physica 7, 284-304.
27. Liebovitch, L. S. (1989). Testing fractal and Markov models of ion channel kinetics. Biophys. J. 55, 373-377.
28. Marmont, G. (1948). Studies on the axon membrane I. A new method. J. Cell. Comp. Physiol. 34, 351-382.
29. Mercik, S., Weron, K. & Siwy, Z. (1999). Statistical analysis of ionic current fluctuations in membrane channels. Phys. Rev. E 60, 7343-7348.
30. Millonas, M. M. & Hanck, D. A. (1998a). Nonequilibrium response spectroscopy of voltage-sensitive ion channel gating. Biophys. J. 74, 210-229.
31. Millonas, M. M. & Hanck, D. A. (1998b). Nonequilibrium response spectroscopy and the molecular kinetic of proteins. Phys. Rev. Lett. 80, 401-404.
32. Schoppa, N. E. & Sigworth, F. J. (1998a). Activation of Shaker potassium channels I. Characterization of voltage-dependent transitions. J. Gen. Physiol. 111, 271-294.
33. Schoppa, N. E. & Sigworth, F. J. (1998b). Activation of Shaker potassium channels II. Kinetics of the V2 mutant channel. J. Gen. Physiol. 111, 295-311.
34. Schoppa, N. E. & Sigworth, F. J. (1998c). Activation of Shaker potassium channels III. An activation gating model for wild-type and V2 mutant channels. J. Gen. Physiol. 111, 313-342.
35. Stefani, E. & Bezanilla, F. (1996). Early events in voltage gating. Biophys. J. 70, A143 (abstr.).
36. Takashima, S. (1978). Frequency domain analysis of asymmetry current in the squid axon membrane. Biophys. J. 22, 115-119.
37. Taylor, R. E. & Bezanilla, F. (1979). Comment on the measurements of gating currents in the frequency domain. Biophys. J. 26, 338-340.
38. Vandenberg, C. A. & Bezanilla, F. (1991a). Single channel, macroscopic ionic, and gating currents in the squid giant axon. Biophys. J. 60, 1499-1510.
39. Vandenberg, C. A. & Bezanilla, F. (1991b). A sodium channel gating model based on single channel, macroscopic ionic, and gating currents in the squid giant axon. Biophys. J. 60, 1511-1533.
40. Wonderlin, W. F., French, R. J. & Arispe, N. J. (1990). Recording and analysis of currents from single ion channels. In: Neurophysiological Methods (Vanderwolf, C. H., ed.), pp. 35-142. Clifton, NJ: Hummana Press.
41. Zagotta, W. N., Hoshi, T., Dittman, J. & Aldrich, R. W. (1994a). Shaker potassium channel gating II: transitions in the activation pathway. J. Gen. Physiol. 103, 279-319.
42. Zagotta, W. N., Hoshi, T. & Aldrich, R. W. (1994b). Shaker potassium channel gating III: evaluation of kinetic models for activation. J. Gen. Physiol. 103, 321-362.