A new grapevine yellows phytoplasma from the Buckland Valley of Victoria, Australia

Vitis

Volumn 41, Issue 3, 2002, Pages 147-153

  Constable, F E ^a   Whiting, J R ^a   Gibb, K S ^a   Symons, R H ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

Australia; Grapevine yellows; Phytoplasma

Indexed keywords

RIBOSOME RNA; RNA 16S;

ASTER YELLOWS DISEASE; AUSTRALIA; DNA SEQUENCE; GENE CLUSTER; GENETIC SIMILARITY; GRAPE; GRAPEVINE YELLOWS PHYTOPLASMA; PLANT DISEASE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RNA SEQUENCE; RURAL AREA; SEQUENCE ANALYSIS;

EID: 0036390691     PISSN: 00427500     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (32)

1. Alma, A.; Davis, R. E.; Vibio, M.; Danielli, A.; Bosco, D.; Arzone, A.; Bertaccini, A.; 1996: Mixed infection of grapevines in northern Italy by phytoplasmas including 16S rRNA RFLP subgroup 16SrIB strains previously unreported in this host. Plant Dis. 80, 418-421.
2. Arzone, A.; Alma, A.; Bosco, D.; Patetta, A.; 1995: MLO-infected weeds in the vineyards of northwestern Italy. J. Phytopathol. 143, 257-260.
3. Bianco, P. A.; Davis, R. E.; Prince, J. P.; Lee, I. M.; Gundersen, D. E.; Fortusini, A.; Belli, G.; 1993: Double and single infections by aster yellows and elm yellows MLOs in grapevines with symptoms characteristic of flavescence doree. Riv. Patol. Veg. 3, 69-82.
4. Chen, K. H.; Credi, R.; Loi, N.; Maixner, M.; Chen, T. A.; 1994: Identification and grouping of mycoplasmalike organisms associated with grapevine yellows and clover phyllody diseases based on immunological and molecular analyses. Appl. Environ. Microbiol. 60, 1905-1913.
5. Constable, F. E.; Gibb, K. S.; Moran, J. R.; Wilson, Y. M.; 1998: Incidence of phytoplasma associated with yellows, restricted spring growth and late season leaf curl symptoms in grapevines. Aust. Grapegr. Winem. (409), 19-20.
6. Daire, X.; Clair, D.; Reinert, W.; Boudon-Padieu, E.; 1997: Detection and differentiation of grapevine yellows phytoplasmas belonging to the elm yellows group and to the stolbur subgroup by PCR amplification of non-ribosomal DNA. Eur. J. Plant Pathol. 103, 507-514.
7. Daire, X.; Larrue, J.; Boudon-Padieu, E.; Caudwell, A.; 1993: Diversity amongst mycoplasma like organisms inducing grapevine yellows in France. Vitis 32, 159-163.
8. Davis, R. E.; Dally, E. L.; Gundersen, D. E.; Lee, I. M.; Habili, N.; 1997: "Candidatus Phytoplasma australiense", a new phytoplasma taxon associated with Australian Grapevine yellows. Intern. J. Syst. Bacteriol. 47, 262-269.
9. Davis, R. E.; Jomantiene, R.; Dally, E. L.; Wolf, T. K.; 1998: Phytoplasmas associated with grapevine yellows in Virginia belong to group 16SrI, subgroup A (tomato big bud phytoplasma subgroup), and group 16SrIII, new subgroup I. Vitis 37, 131-137.
10. Davis, R. E.; Prince, J. P.; 1994: Molecular Diagnosis of mycoplasma-like organisms (MLOs) in plants. Appl. Biochem. Biotech. 48, 23-26.
11. Deng, S.; Hiruki, C.; 1991: Amplification of 16S rRNA genes from culturable and non-culturable Mollicutes. J. Microbiol. Meth. 14, 53-61.
12. Felsenstein, J.; 1989: PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5, 164-166.
13. Gibb, K. S.; Constable, F. E.; Moran, J.; Padovan, A. C.; 1999: Phytoplasmas in Australian grapevines - detection, differentiation and associated diseases. Vitis 38, 107-114.
14. Green, M. J.; Thompson, D. A.; Mackenzie, D. J.; 1999: Easy and efficient DNA extraction from woody plants for the detection of phytoplasmas by polymerase chain reaction. Plant Dis. 83, 482-485.
15. Gundersen, D. E.; Lee, I. M.; 1996: Ultrasensitive detection of phytoplasmas by nested-PCR assays using two universal primer pairs. Phytopathol. mediterr. 35, 144-151.
16. Gundersen, D. E.; Lee, I. M.; Rehner, S. A.; Davis, R. E.; Kingsbury, D. T.; 1994: Phylogeny of mycoplasma-like organisms (phytoplasmas): A basis for their classification. J. Bacteriol. 176, 5244-5254.
17. Gundersen, D. E.; Lee, I. M; Schaff, D. A.; Harrison, N. A.; Chang, C. J.; Davis, R. E.; Kingsbury, D. T.; 1996: Genomic diversity and differentiation among phytoplasma strains in 16S rRNA groups I (aster yellows and related phytoplasmas) and III (X-disease and related phytoplasmas). Intern. J. Syst. Bacteriol. 46, 64-75.
18. Hanahan, D.; 1983: Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166, 557-580.
19. Lee, I. M.; Gundersen-Rindal, D. E.; Davis, R. E.; Bartoszyk, I. M.; 1998: Revised classification scheme of phytoplasmas based on RFLP analyses of 16S rRNA and ribosomal protein gene sequences. Int. J. Syst. Bacteriol. 48, 1153-1169.
20. Lee, I. M.; Hammond, R. W.; Davis, R. E.; Gundersen, D. E.; 1993: Universal amplification and analysis of pathogen 16S rDNA for classification and identification of mycoplasma-like organisms. Phytopathology 83, 834-842.
21. Liefting, L. W.; Andersen, M. T.; Beever, R. E.; Gardner, R. C.; Forster, R. L. S.; 1996: Sequence heterogeneity in the two 16SrRNA genes of Phormium yellow leaf phytoplasma. Appl. Environ. Microbiol. 62, 3133-3139.
22. Lorenz, K. H.; Schneider, B.; Ahrens, U.; Seemüller, E.; 1995: Detection of the apple proliferation and pear decline phytoplasmas of ribosomal and nonribosomal DNA. Phytopathology 85, 771-776.
23. Maixner, M.; Ahrens, U.; Seemüller, E.; 1995: Detection of the German grapevine yellows (Vergilbungskrankheit) MLO in grapevine, alternative hosts and a vector by a specific PCR procedure. Eur. J. Plant Pathol. 101, 241-250.
24. Nei, M.; Li, W. H.; 1979: Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76, 5269-5273.
25. Padovan, A. C.; Gibb, K. S.; Bertaccini, A.; Vibio, M.; Bonfiglioli, R. E.; Magarey, P. A.; Sears, B. B.; 1995: Molecular detection of the Australian grapevine yellows phytoplasma and comparison with Grapevine yellows phytoplasmas from Italy. Aust. J. Grape Wine Res. 1, 25-31.
26. Padovan, A. C.; Gibb, K. S.; Boudon-Padieu, E.; Daire, X.; 1996: A comparison of the phytoplasma associated with Australian grapevine yellows to other phytoplasmas in grapevine. Vitis 35, 189-194.
27. Page, R. D. M.; 1996: TREEVIEW: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12, 357-358.
28. Prince, J. P.; Davis, R. E.; Wolf, T. K.; Lee, I. M.; Mogen, B. D.; Dally, E. L.; Bertaccini, A.; Credi, R.; Barba, M.; 1993: Molecular detection of diverse mycoplasma-like organisms (MLOs) associated with grapevine yellows and their classification with aster yellows, X-disease, and elm yellows MLOs. Phytopathology 83, 1130-1137.
29. Schneider, B.; Gibb, K. S.; Seemüller, E.; 1997: Sequence and RFLP analysis of the elongation factor Tu gene used in differentiation and classification of phytoplasmas. Microbiology 143, 3381-3389.
30. Schneider, B.; Seemüller, E.; Smart, C. D.; Kirkpatrick, B. C.; 1995: Phylogenetic classification of plant pathogenic Mycoplasma like organisms or phytoplasmas. In: S. Razin and J. G. Tully (Eds.): Molecular and Diagnostic Procedures in Mycoplasmology, Vol. 1, 369-380, Academic press, San Diego.
31. Seemüller, E.; Marcone, E.; Lauer, U.; Ragozzino, A.; Göschl, M.; 1998: Current status of molecular classification of the phytoplasmas. J. Plant Pathol. 80, 3-26.
32. Thompson, J. D.; Higgins, D. G.; Gibson, T. J.; 1994: CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighing, position-specific gap penalties and weight matrix choice." Nucleic Acids Res. 22, 4673-4680.