메뉴 건너뛰기




Volumn 24, Issue 1, 2002, Pages 1-9

Codon adaptation and synonymous substitution rate in diatom plastid genes

Author keywords

Chloroplast DNA; Codon bias; Codon usage; Natural selection; PsbA

Indexed keywords

ADAPTATION, PHYSIOLOGICAL; AMINO ACID SUBSTITUTION; CODON; DIATOMS; GENES; MUTATION; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PHOTOSYSTEM II PROTEIN COMPLEX; PHYLOGENY; PLASTIDS; VARIATION (GENETICS);

EID: 0036374040     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(02)00263-4     Document Type: Article
Times cited : (7)

References (37)
  • 1
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at silent sites in Drosophila DNA
    • (1995) Genetics , vol.139 , pp. 1067-1076
    • Akashi, H.1
  • 3
    • 0025941139 scopus 로고
    • The selection-mutation-drift theory of synonymous codon usage
    • (1991) Genetics , vol.129 , pp. 897-907
    • Bulmer, M.1
  • 4
    • 0029563023 scopus 로고
    • A method for estimating the numbers of synonymous and nonsynonymous substitutions per site
    • (1995) J. Mol. Evol. , vol.41 , pp. 1152-1159
    • Comeron, J.M.1
  • 9
    • 0023064998 scopus 로고
    • Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons
    • (1987) J. Mol. Evol. , vol.24 , pp. 337-345
    • Li, W.-H.1
  • 10
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • Li, W.-H.1
  • 15
    • 0027328291 scopus 로고
    • Chloroplast DNA codon use: Evidence for selection at the psbA locus based on tRNA availability
    • (1993) J. Mol. Evol. , vol.37 , pp. 273-280
    • Morton, B.R.1
  • 17
    • 0010309623 scopus 로고    scopus 로고
    • Selection on the codon bias of Chlamydomonas reinhardtii chloroplast genes and the plant psbA gene
    • (1996) J. Mol. Evol. , vol.11 , pp. 231-238
    • Morton, B.R.1
  • 18
    • 0030934591 scopus 로고    scopus 로고
    • Rates of synonymous substitution do not indicate selective constraints on the codon use of the plant psbA gene
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 412-419
    • Morton, B.R.1
  • 19
    • 0031979388 scopus 로고    scopus 로고
    • Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages
    • (1998) J. Mol. Evol. , vol.46 , pp. 449-459
    • Morton, B.R.1
  • 20
    • 0001875346 scopus 로고    scopus 로고
    • Codon bias and the context dependency of nucleotide substitutions in the evolution of plastid DNA
    • (2000) Evol. Biol. , vol.31 , pp. 55-103
    • Morton, B.R.1
  • 22
    • 85001085933 scopus 로고
    • Transcription and RNA stability are important determinants of higher plant chloroplast RNA levels
    • (1987) EMBO J. , vol.6 , pp. 1571-1579
    • Mullet, J.E.1    Klein, R.R.2
  • 28
  • 29
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.-H.2
  • 34
    • 0032924868 scopus 로고    scopus 로고
    • Synonymous and nonsynonymous substitution rates in diatoms: A comparison between chloroplast and nuclear genes
    • (1999) J. Mol. Evol. , vol.48 , pp. 209-212
    • Sorhannus, U.1    Fox, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.