Dynamics of RNA with A6 bulge loop

Chinese Science Bulletin

Volumn 47, Issue 12, 2002, Pages 1003-1006

  Liang, Chongrong ^a   Liu, Ciquan ^a  

^a KUNMING INSTITUTE OF ZOOLOGY   (China)

Author keywords

Bend angle; Conformation; Large bulge; RNA

Indexed keywords

TRANSACTIVATOR PROTEIN;

ANALYTIC METHOD; ARTICLE; CONFORMATIONAL TRANSITION; HYDROLYSIS; MOLECULAR DYNAMICS; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN RNA BINDING; RNA STRUCTURE; RNA SYNTHESIS;

EID: 0036310336     PISSN: 10016538     EISSN: None     Source Type: Journal    
DOI: 10.1360/02tb9225     Document Type: Article

References (17)

1. RNA structural elements and RNA function
2. Bulge-induced Bends in RNA: Quantification by transient electric Birefringence
3. Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer
4. Bulge loops used to mearsue the helical twist of RNA in solution
5. Kinking of DNA and RNA by base bulges
6. HIV-I tar trans-activation requires the loop sequence within tar
7. Kinking of RNA helices by bulged based, and the structure of the human immunodeficiency virus transactivator response element
8. Different conformational forms of Escherichia coli and rat liver 5S rRMA revealed by Pb(II)-induced hydrolysis
9. Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs
10. Structure and dynamics of adenosine loops in RNA bulge duplexes, RNA hydration at the bulge site
11. The effect of base sequence on the stability of RNA and DNA single base bulges
12. Analysis of the stability of looped-out and stacked-in conformations of an adenine bulge in DNA using a continuum model for solvent and ions
13. Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model
14. Conformational dynamics of a 5S rRNA hairpin domain containing loop D and a single nucleotide bulge
15. Crystal structure of an RNA duplex r(gugucgcac)(2) with uridine bulges
16. Solution conformation of a five-nucleotide RNA bulge loop from a group I intron
17. The combination of symbolic and numerical computation for three-dimensional modeling of RNA