A new approach to detect a particular DNA sequence by UV-immobilization of its hybridization complex with a highly specific probe resulting from ligation of a tandem of short oligonucleotides in solution

Molecular Biology

Volumn 36, Issue 3, 2002, Pages 327-332

  Kabilov, M R ^a   Pyshnyi, D V ^b   Dymshits, G M ^a   Gashnikova, N M ^c   Pokrovskii, A G ^c   Zarytova, V F ^b   Ivanova, E M ^b  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^b INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

^c STATE RESEARCH CENTER OF VIROLOGY AND BIOTECHNOLOGY VECTOR   (Russian Federation)

Author keywords

Biotin streptavidin system; DNA diagnostics; Ligation; Mismatch; Molecular hybridization; Oligonucleotide tandems; Point mutation; T4 DNA ligase; UV immobilization

Indexed keywords

ALKALINE PHOSPHATASE; DNA; NYLON; OLIGONUCLEOTIDE; STREPTAVIDIN; TETRAMER;

AQUEOUS SOLUTION; ARTICLE; BINDING SITE; COLORIMETRY; DNA HYBRIDIZATION; DNA PROBE; DNA SEQUENCE; IMMOBILIZATION; LIGATION; MEMBRANE; ULTRAVIOLET RADIATION;

EID: 0036296570     PISSN: 00268933     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1016042809619     Document Type: Article

References (35)

1. Syvanen, A.C., Med. Biol., 1986, vol. 64, pp. 313-124.
2. O'Meara, D., Yun, Z., Sonnerborg, A., and Lundeberg, J., J. Clin. Microbiol., 1998, vol. 36, pp. 2454-2459.
3. Leary, J.J., Brigati, D.J., and Ward, D.C., Proc. Natl. Acad. Sci. USA, 1983, vol. 80, pp. 4045-4049.
4. Walter, E., Blum, H.E., Offensperger, W.B., et al., Hepatology, 1987, vol. 7, pp. 557-562.
5. Oser, A., Roth, W.K., and Valet, G., Nucleic Acids Res., 1988, vol. 16, pp. 1181-1196.
6. Lin, H.J., Wu, P.C., Lai, C., and Leong, S., J. Infect. Dis., 1986, vol. 154, pp. 983-989.
7. Seed, B., Genet. Engen. Princ. Meth., 1982, vol. 4, pp. 351-367.
8. Fan, Z.H., Mangru, S., Granzow, R., et al., Anal. Chem., 1999, vol. 71, pp. 4851-4859.
9. Osborne, M.A., Furey, W.S., Klenerman, D., and Balasubramanian, S., Anal. Chem., 2000, vol. 72, pp. 3678-3681.
10. Kremsky, J.N., Dougherty, J.P., Meyers, R.E., et al., Nucleic Acids Res., 1987, vol. 15, pp. 2891-2909.
11. Bamdad, C., Biophys. J., 1998, vol. 75, pp. 1997-2003.
12. Cannon, G., Heinhorst, S., and Weissbach, A., Anal. Biochem., 1985, vol. 149, pp. 229-237.
13. Saiki, R.K., Walsh, P.S., Levenson, C.H., and Erlich, H.A., Proc. Natl. Acad. Sci. USA, vol. 86, pp. 6230-6234.
14. Kalachikov, S.M., Adarichev, V.A., and Dymshits, G.M., Bioorgan. Khim., 1992, vol. 18, pp. 52-62.
15. Drmanac, R., Labat, I., Brukner, I., and Crkvenjakov, R., Genomics, 1989, vol. 4, pp. 114-128.
16. Pastinen, T., Kurg, A., Metspalu, A., et al., Genome Res., 1997, vol. 7, pp. 606-614.
17. Beier, M. and Hoheisel, J.D., Nucleic Acids Res., 2000, vol. 28, E11, pp. i-vi.
18. LaForge, K.S., Shick, V., Spangler, R., et al., Am. J. Med. Genet., 2000, vol. 96, pp. 604-615.
19. Langdale, J.A. and Malcolm, A.D., Gene, 1985, vol. 36, pp. 201-210.
20. Urdea, M.S., Running, J.A., Horn, T., et al., Gene, 1987, vol. 61, pp. 253-264.
21. Cardullo, R.A., Agrawal, S., Flores, C., et al., Proc. Natl. Acad. Sci. USA, 1988, vol. 85, pp. 8790-8794.
22. Oser, A., Collasius, M., and Valet, G., Anal. Biochem., 1990, vol. 191, pp. 295-301.
23. Selvin, P.R. and Hearst, J.E., Proc. Natl. Acad. Sci USA, 1994, vol. 91, pp. 10024-10028.
24. Svanvik, N., Westman, G., Wang, D., and Kubista, M., Anal. Biochem., 2000, vol. 281, pp. 26-35.
25. Gamper, H.B., Cimino, G.D., Isaacs, S.T., et al., Nucleic Acids Res., 1986, vol. 14, pp. 9943-9954.
26. Zarytova, V.F., Ivanova, E.M., and Romanenko, V.P., Bioorgan. Khim., 1983, vol. 9, pp. 516-521.
27. Brown, T. and Brown, D.J.S., Oligonucleotides and Analogues, Eckstein, F., Ed., New York: IR, 1991, pp. 1-24.
28. Gorozhankin, A.V., Ivanova, E.M., and Kobets, N.D., Bioorgan. Khim., 1993, vol. 19, pp. 81-85.
29. Handbook of Biochemistry and Molecular Biology: Nucleic Acids, Fasman, G.D., Ed., Cleveland: CRC, 1975, vol. 1, p. 589.
30. Ou, C.-Y., Kwok, S., Mitchell, S.W., et al., Science, 1988, vol. 239, pp. 295-297.
31. Pyshnyi, D.V., Skobeltsyna, L.M., Gushchina, E.N., et al., Mol. Biol., 2000, vol. 34, pp. 984-997.
32. Berkner, K. and Folk, W.R., J. Biol. Chem., 1977, vol. 252, pp. 3176-3184.
33. New England Biolabs: Catalog, 1990-1991, p. 51.
34. Pyshnyi, D.V., Krivenko, A.A., Lokhov, S.G., et al., Bioorgan. Khim., 1998, vol. 24, pp. 32-37.
35. Skobeltsyna, L.M., Pyshnyi, D.V., Shishkina, I.G., et al., Mol. Biol., 2000, vol. 34, pp. 378-385.