Atypical processing in domain III of 23S rRNA of Rhizobium leguminosarum ATCC 10004T at a position homologous to an rRNA fragmentation site in protozoa

Journal of Bacteriology

Volumn 184, Issue 12, 2002, Pages 3176-3185

  Klein, Franziska ^a   Samorski, Regina ^a   Klug, Gabriele ^a   Evguenieva Hackenberg, Elena ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RIBOSOME RNA; RNA 23S;

ARTICLE; BACTERIAL GROWTH; BACTERIUM CULTURE; GENETIC TRANSCRIPTION; NONHUMAN; NUCLEIC ACID ANALYSIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTOZOON; RHIZOBIUM LEGUMINOSARUM; RNA ANALYSIS; TRYPANOSOMA;

ANIMALS; BASE SEQUENCE; CRITHIDIA; ENDORIBONUCLEASES; INTRONS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RHIZOBIUM LEGUMINOSARUM; RIBONUCLEASE III; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, BACTERIAL; RNA, PROTOZOAN; RNA, RIBOSOMAL, 23S; TRYPANOSOMATINA;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); PROTOZOA; RHIZOBIUM; RHIZOBIUM LEGUMINOSARUM; TRYPANOSOMA; UNCULTURED ALPHA PROTEOBACTERIUM;

EID: 0036271254     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.12.3176-3185.2002     Document Type: Article

References (36)

1. Rhizobium gallicum sp nov. and Rhizobium giardinii sp. nov., from Phaseolus vulgaris nodules
2. R-factor transfer in Rhizobium leguminosarum
3. RNA components of Escherichia coli degradosome: Evidence for rRNA decay
4. The excision of intervening sequences from Salmonella 23S ribosomal RNA
5. Phylogenetic relationships of Salmonella based on rRNA sequences
6. Different cleavage specifities of RNases III from Rhodobacter capsulatus and Escherichia coli
7. Localization and structural analysis of the ribosomal RNA operons of Rhodobacter sphaeroides
8. RNase III processing of intervening sequences found in helix 9 of 23S rRNA in alpha-Proteobacteria
9. Expansion segments: Regions of variable size that interrupt the universal core secondary structure of ribosomal RNA
10. Evolution of rRNA gene organization
11. Functional Escherichia coli 23S rRNAs containing processed and unprocessed intervening sequences from Salmonella typhimurium
12. Initial events in the degradation of the polycistronic puf mRNA in Rhodobacter capsulatus and consequences for further processing steps
13. Degradation of rRNA in Salmonella strains: A novel mechanism to regulate the concentrations of rRNA and ribosomes
14. Cloning of a gene involved in rRNA precursor processing and 23S rRNA cleavage in Rhodobacter capsulatus
15. Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
16. RNase III deficient Salmonella typhimurium LT2 contains intervening sequences (IVSs) in its 23S rRNA
17. Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure
18. Fragmentation of 23S rRNA in strains of Proteus and Providencia results from intervening sequences in the rm (rRNA) genes
19. Non-random fragmentation of ribosomal RNA in Helicobacter pylori during conversion to coccoid form
20. Function, mechanism and regulation of bacterial ribonucleases
21. Sequence diversity of intervening sequences (IVSs) in the 23S ribosomal RNA in Salmonella spp
22. Distribution of intervening sequences in the genes for 23S rRNA and rRNA fragmentation among strains of the Salmonella reference collection B (SARB) and SARC sets
23. Intervening sequence with conserved open reading frame in eubacterial 23S rRNA genes
24. Identification and analysis of the mc gene for RNase III in Rhodobacter capsulatus
25. Fragmentations of the large-subunit rRNA in the family Rhizobiaceae
26. Unusual organization of the 23S rRNA genes in Rhizobiaceae
27. Sequences around the fragmentation sites of the large subunit ribosomal rRNA in the family Rhizobiaceae
28. Diversity and relationships of bradyrhizobia from Amphicarpaea bracteata based on partial nod and ribosomal sequences
29. Comparison of partial 23S rDNA sequences from Rhizobium species
30. Phylogenetic and molecular characterization of a 23S rRNA gene positions the genus Campylobacter in the epsilon subdivision of the Proteobacteria and shows that the presence of transcribed spacers is common in Campylobacter spp
31. Decay of mRNA in Escherichia coli: Investigation of the fate of specific segments of transcripts
32. Characterization of a separate small domain derived from the 5′ end of 23S rRNA of an α-proteobacterium
33. Divergent mechanisms of 5′ 23S rRNA IVS processing in the alpha-proteobacteria
34. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide