Distinguishing “looped-out” and “stacked-in” dna bulge conformation using fluorescent 2-aminopurine replacing a purine base

Journal of Biomolecular Structure and Dynamics

Volumn 19, Issue 5, 2002, Pages 929-934

  Jiao, Yuguo ^a   Stringfellow, Sandra ^a   Yu, Hongtao ^a  

^a JACKSON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPURINE; ADENINE; FLUORESCENT DYE; GUANINE; PURINE;

ARTICLE; CONFORMATIONAL TRANSITION; DNA CONFORMATION; DNA DENATURATION; DNA FLANKING REGION; DNA HELIX; FLUORESCENCE SPECTROSCOPY; PRIORITY JOURNAL;

EID: 0036254819     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2002.10506795     Document Type: Article

References (40)

1. Streisinger, G., and Owen, J. E., 1985. Genetics, 109:633–59.
2. Streisinger, G., Okada, Y., Emrich, J., Newton, J., Tsugeta, A., Terzaghi, E., and Inouye, M., 1966. Cold Spring Harbor Symp. Quant. Biol., 31:77–84.
3. Ripley, L. S., 1982. Proc. Natl. Acad. Sci. USA, 79:4128–32.
4. Romaniuk, P. J., Lowry, P., Wu, H.-N., Stormo, G., and Uhlenbeck, O. C., 1987. Biochemistry, 26:1563–8.
5. Wu, H.-N., and Uhlenbeck, O. C., 1987. Biochemistry, 26:8221–6.
6. Witherell, G. W., and Uhlenbeck, O. C., 1989. Biochemistry, 28:71–6.
7. Kleff, S., and Kemper, B., 1988. EMBO, 7:1527–35.
8. Woodson, S. A., and Crothers, D. M., 1988. Biochemistry, 27:436–45.
9. Woodson, S. A., and Crothers, D. M., 1988. Biochemistry, 27:3130–41.
10. Kalnik, M. W., Norman, D. G., Li, B. F., Swann, P. F., and Patel, D. J., 1990. J. Biol. Chem., 265:636–47.
11. Kalnik, M. W., Norman, D. G., Swann, P. F., and Patel, D. J., 1989. J. Biol. Chem., 264:3702–12.
12. Hare, D., Shapiro, L., and Patel, D. J., 1986. Biochemistry, 25:7456–64.
13. Patel, D. J., Kozlowski, S. A., Marky, L. A., Rice, J. A., Broka, C., Itakura, K., and Breslauer, K. J., 1982. Biochemistry, 21:445–51.
14. Kalnik, M. W., Norman, D. G., Zagorski, M. G., Swann, P. F., and Patel, D. J., 1989. Biochemistry, 28:294–303.
15. Morden, K. M., Chu, Y. G., Martin, F. H., and Tinoco, I., 1983. Biochemistry, 22:5557–63.
16. Nikonowicz, E., Roongta, V., Jones, C. R., and Gorenstein, D. G., 1989. Biochemistry, 28:8714–25.
17. Nikonowicz, E. P., Meadows, R. P., and Gorenstein, D. G., 1990. Biochemistry, 29:4193–204.
18. Joshua-Tor, L., Frolow, F., Appella, E., Hope, H., Rabinovich, D., and Sussman, J. L., 1992. J. Mol. Biol., 225:397–431.
19. Bhattacharya, A., and Lilley, D. M. J., 1989. Nucleic Acids Res., 17:6821–39.
20. Rice, J. A., and Crothers, D. M., 1989. Biochemistry, 28:4512–6.
21. Wang, Y.-H., and Griffith, J., 1991. Biochemistry, 30:1358–63.
22. Zacharias, M., and Sklenar, H., 1997. Biophys. J., 73:2990–3003.
23. Zhu, J., and Wartell, R. M., 1999. Biochemistry, 38:15986–93.
24. Ippolito, J. A., and Steitz, T. A., 1998. Proc. Natl. Acad. Sci. USA, 95:9819–24.
25. Fourmy, D., Recht, M. I., Blanchard, S. C., and Puglisi, J. D., 1996. Science, 274:1367–71.
26. Frey, M. W., Sowers, L. C., Millar, D. P., and Benkovic, S. J., 1995. Biochemistry, 34:9185–92.
27. Bloom, L. B., Otto, M. R., Beechem, J. M., and Goodman, M. F., 1993. Biochemistry, 32:11247–58.
28. Hochstrasser, R. A., Carver, T. E., Sowers, L. C., and Millar, D. P., 1994. Biochemistry, 33:11971–9.
29. Rachofsky, E. L., Seibert, E., Stivers, J. T., Osman, R., and Ross, J. B. A., 2001. Biochemistry, 40:957–67.
30. Rachofsky, E. L., Osman, R., and Ross, J. B. A., 2001. Biochemistry, 40:946–56.
31. Raney, K. D., Sowers, L. C., Millar, D. P., and Benkovic, S. J., 1994. Proc. Natl. Acad. Sci. USA, 91:6644–8.
32. Eritja, R., Kaplan, B. E., Mhaskar, D., Sowers, L. C., Petruska, J., and Goodman, M. F., 1986. Nucleic Acids Res., 14:5869–84.
33. McLaughlin, L. W., Leong, T., Benseler, F., and Piel, N., 1988. Nucleic Acids Res., 16:5631–44.
34. Xu, D., Evans, K. O., and Nordlund, T. M., 1994. Biochemistry, 33:9592–9.
35. Nordlund, T. M., Xu, D., and Evans, K. O., 1993. Biochemistry, 32:12090–5.
36. Nordlund, T. M., Anderson, S., Nilsson, A., Rigler, R., Graslund, A., and McLaughlin, L. W., 1989. Biochemistry, 28:9095–103.
37. Law, S. M., Eritja, R., Goodman, M. F., and Breslauer, K. J., 1996. Biochemistry, 35:12329–37.
38. Fagan, P. A., Fabrega, C., Eritja, R., Goodman, M. F., and Wemmer, D. E., 1996. Biochemistry, 35:402633
39. Sowers, L. C., Boulard, Y., and Fazakerley, G. V., 2000. Biochemistry, 39:7613–20.
40. Zagorowska, I., and Adamiak, R. W., 1996. Biochimie, 78:123–30.