Determinants of the recognition of enteroviral cloverleaf RNA by coxsackievirus B3 proteinase 3C

RNA

Volumn 8, Issue 2, 2002, Pages 188-201

  Zell, Roland ^a   Sidigi, Karim ^a   Bucci, Enrico ^a   Stelzner, Axel ^a   Görlach, Matthias ^a  

^a JENA UNIVERSITY HOSPITAL   (Germany)

Author keywords

CD spectroscopy; Enterovirus replication; Picornavirus; Replication initiation; RNA secondary structures

Indexed keywords

BINDING PROTEIN; COMPLEMENTARY DNA; PROTEINASE; RECOMBINANT PROTEIN; RIBONUCLEOPROTEIN; VIRUS PROTEIN; VIRUS RNA;

5' UNTRANSLATED REGION; ARTICLE; BINDING AFFINITY; CIRCULAR DICHROISM; ENTEROVIRUS; NONHUMAN; PICORNAVIRUS; PLASMID; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN RNA BINDING; RHINOVIRUS; RNA CONFORMATION; RNA STRUCTURE; RNA SYNTHESIS; VIRUS GENOME; VIRUS REPLICATION;

BASE SEQUENCE; BINDING SITES; CLONING, MOLECULAR; CYSTEINE ENDOPEPTIDASES; DNA PRIMERS; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; ENTEROVIRUS; ENTEROVIRUS B, HUMAN; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEINS; HUMANS; KINETICS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RECOMBINANT PROTEINS; RESTRICTION MAPPING; RNA, VIRAL; RNA-BINDING PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; VIRAL PROTEINS;

BOVINAE; BOVINE ENTEROVIRUS; COXSACKIEVIRUS; ENTEROVIRUS; HUMAN RHINOVIRUS 2; HUMAN RHINOVIRUS SP.; PICORNAVIRIDAE; POLIOVIRUS; RHINOVIRUS; RNA VIRUSES;

EID: 0036214405     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838202012785     Document Type: Article

References (34)

1. Poliovirus RNA synthesis utilizes an RNP complex formed around the 5′-end of viral RNA
2. A functional ribonucleoprotein complex forms around the 5′ end of poliovirus RNA
3. pro) gene of poliovirus can suppress a mutation in the 5′ noncoding region
4. Poly(rC) binding protein 2 binds to stem-loop IV of the poliovirus RNA 5′ noncoding region: Identification by automated liquid chromatography-tandem mass spectrometry
5. Quantitative analysis of proteins for UV circular dichroism spectra by neural networks
6. Sequences within the poliovirus internal ribosome entry segment control viral RNA synthesis
7. Two functional complexes formed by KH domain containing proteins with the 5′ noncoding region of poliovirus RNA
8. The mRNA poly(A)-binding protein: Localization, abundance and RNA-binding specificity
9. Initial analysis of 750 MHz NMR spectra of selectively [15N]]-G,U labelled E. coli 5S rRNA
10. Mutational analysis of the proposed FG loop of poliovirus proteinase 3C identifies amino acids that are necessary for 3CD cleavage and might be determinants of a function distinct from proteolytic activity
11. Interaction of poliovirus polypeptide 3CDpro with the 5′ and 3′ termini of the poliovirus genome. Identification of viral and cellular cofactors needed for efficient binding
12. Structure of an RNA hairpin from HRV-14
13. Cleavage of poly(A)-binding protein by enterovirus proteases concurrent with inhibition of translation in vitro
14. AU and GC base pairs in synthetic RNAs have characteristic vacuum UV CD bands
15. Defined recombinants of poliovirus and coxsackievirus: Sequence-specific deletions and functional substitutions in the 5′-noncoding regions of viral RNAs
16. DNA "melting" proteins. IV. Fluorescence measurements of binding parameters for bacteriophage T4 gene 32-protein to mono-, oligo- and polynucleotides
17. In vitro RNA binding of the hepatitis A virus proteinase 3C (HAV 3Cpro) to secondary structure elements within the 5′-terminus of the HAV genome
18. pro) binds specifically to the 5′-noncoding region of the viral RNA
19. Mutations in capsid polypeptide VP2 alter the tropism of the Nancy strain of Coxsackievirus B3
20. Structure-assisted design of mechanism-based irreversible inhibitors of human rhinovirus 3C protease with potent antiviral activity against multiple rhinovirus serotypes
21. A quadruple mutant T4 RNA hairpin with the same structure as the wild-type translational repressor
22. Poliovirus proteinase 3C: Large-scale expression, purification, and specific cleavage activity on natural and synthetic substrates in vitro
23. Poly(rC) binding protein 2 forms a ternary complex with the 5′-terminal sequences of poliovirus RNA and the viral 3CD proteinase
24. Picornaviridae: The viruses and their replication
25. Virus-encoded proteinases of the picornavirus super-group
26. Circular dichroism of nucleic acids monomers
27. The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases
28. Translation and replication properties of the human rhinovirus genome in vivo and in vitro
29. Sequence and structural determinants of the interaction between the 5′-noncoding region of picornavirus RNA and rhinovirus protease 3C
30. Activation of human rhinovirus 14 3C protease
31. Interaction between the 5′-terminal cloverleaf and 3AB/3CDpro of poliovirus is essential for RNA replication
32. Coxsackieviral proteins functionally recognize the polioviral cloverleaf structure of the 5′-NTR of a chimeric enterovirus RNA: Influence of species-specific host cell factors on virus growth
33. Functional features of the bovine enterovirus 5′-non-translated region
34. Application of genome sequence information to the classification of bovine enteroviruses: The importance of 5′- and 3′-nontranslated regions