Human immunodeficiency virus type 1 (HIV-1) quasispecies at the sites of Mycobacterium tuberculosis infection contribute to systemic HIV-1 heterogeneity

Journal of Virology

Volumn 76, Issue 4, 2002, Pages 1697-1706

  Collins, Kalonji R ^a   Quiñones Mateu, Miguel E ^a   Wu, Mianda ^a   Luzze, Henry ^a   Johnson, John L ^a   Hirsch, Christina ^a   Toossi, Zahra ^a   Arts, Eric J ^a  

^a CASE WESTERN RESERVE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ETHAMBUTOL; ISONIAZID; PYRAZINAMIDE; RIFAMPICIN; VIRUS ENVELOPE PROTEIN; VIRUS RNA;

ADULT; ARTICLE; BLOOD; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; GENETIC HETEROGENEITY; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; LYMPHOCYTE COUNT; MALE; MONONUCLEAR CELL; MYCOBACTERIUM TUBERCULOSIS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLEURA CAVITY; PLEURA FLUID; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TUBERCULOUS PLEURISY; UGANDA; UNINDEXED SEQUENCE; VIRION; VIRUS ACTIVATION; VIRUS LOAD; VIRUS REPLICATION;

ADULT; AIDS-RELATED OPPORTUNISTIC INFECTIONS; DNA, VIRAL; FEMALE; GENE PRODUCTS, ENV; HIV INFECTIONS; HIV-1; HUMANS; LEUKOCYTES, MONONUCLEAR; MALE; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM TUBERCULOSIS; PHYLOGENY; PLEURAL EFFUSION; SEQUENCE ANALYSIS, DNA; TUBERCULOSIS, PLEURAL; VARIATION (GENETICS);

EID: 0036148120     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.76.4.1697-1706.2002     Document Type: Article

References (60)

1. Distinct HIV-1 long terminal repeat quasispecies present in nervous tissues compared to that in lung, blood and lymphoid tissues of an AIDS patient
2. Recruitment of inflammatory cells to the pleural space. Chemotactic cytokines, IL-8, and monocyte chemotactic peptide-1 in human pleural fluids
3. Pleural disease in patients with acquired immune deficiency syndrome
4. Isolation of mononuclear cells and granulocytes from human blood. Isolation of mononuclear cells by one centrifugation, and of granulocytes by combining centrifugation and sedimentation at 1 g
5. Greater diversity of HIV-1 quasispecies in HIV-infected individuals with active tuberculosis
6. Association between culturable human immunodeficiency virus type 1 (HIV-1) in semen and HIV-1 RNA levels in semen and blood: Evidence for compartmentalization of HIV-1 between semen and blood
7. Human immunodeficiency virus type 1 populations in blood and semen
8. Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule
9. Tuberculosis generates a microenvironment enhancing the productive infection of local lymphocytes by HIV
10. Evolution of pathogenic viruses with special reference to the rates of synonymous and nonsynonymous substitutions
11. Effect of Mycobacterium tuberculosis on HIV replication. Role of immune activation
12. Human immunodeficiency virus type 1 shedding pattern in semen correlates with the compartmentalization of viral quasispecies between blood and semen
13. Predominance of distinct viral genotypes in brain and lymph node compartments of HIV-1-infected individuals
14. Augmentation of apoptosis and interferon-gamma production at sites of active Mycobacterium tuberculosis infection in human tuberculosis
15. Rapid turnover of plasma visions and CD4 lymphocytes in HIV-1 infection
16. Human immunodeficiency virus type 1 strains in the lungs of infected individuals evolve independently from those in peripheral blood and are highly conserved in the C-terminal region of the envelope V3 loop
17. Human immunodeficiency virus in semen arises from a genetically distinct virus reservoir
18. HIV signature and sequence variation analysis
19. Numbering positions in HIV relative to HXB2CG
20. Genetic differences between blood- and brain-derived viral sequences from human immunodeficiency virus type 1-infected patients: Evidence of conserved elements in the V3 region of the envelope protein of brain-derived sequences
21. Delayed diagnosis of tuberculosis in patients with human immunodeficiency virus infection
22. HIV heterogeneity and disease progression in AIDS: A model of continuous virus adaptation
23. Interactive analysis of phylogeny and character evolution using the computer program MacClade
24. Mycobacterium tuberculosis enhances human immunodeficiency virus-1 replication in the lung
25. Low copy number and limited variability of proviral DNA in alveolar macrophages from HIV-1-infected patients: Evidence for genetic differences in HIV-1 between lung and blood macrophage populations
26. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
27. Interleukin-8 induces lymphocyte chemotaxis into the pleural space. Role of pleural macrophages
28. TreeView: An application to display phylogenetic trees on personal computers
29. HIV infection of choroid plexus in AIDS and asymptomatic HIV-infected patients suggests that the choroid plexus may be a reservoir of productive infection
30. Reservoirs for HIV-1: Mechanisms for viral persistence in the presence of antiviral immune responses and antiretroviral therapy
31. Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1
32. A dual infection/competition assay shows a correlation between ex vivo human immunodeficiency virus type 1 fitness and disease progression
33. Molecular characterization of human immunodeficiency virus type 1 isolates from Venezuela
34. Characterization of the reverse transcriptase of a human immunodeficiency virus type 1 group O isolate
35. Phylogenetic analysis using PHYLIP
36. Human immunodeficiency virus type 1 molecular evolution and the measure of selection
37. Tuberculosis in HIV positive patients in South Africa: A comparative radiological study with HIV negative patients
38. Sequencing primers for HIV-1
39. Quantitative analysis of viral burden in tissues from adults and children with symptomatic human immunodeficiency virus type 1 infection assessed by polymerase chain reaction
40. Natural selection on the gag, pol, and env genes of human immunodeficiency virus 1 (HIV-1)
41. Patterns of chemokine receptor fusion cofactor utilization by human immunodeficiency virus type 1 variants from the lungs and blood
42. A cladistic measure of gene flow inferred from the phylogenies of alleles
43. Detecting isolation by distance using phylogenies of genes
44. Multiple regression and correlation extensions of the Mantel test of matrix correspondence
45. Time course of cerebrospinal fluid responses to antiretroviral therapy: Evidence for variable compartmentalization of infection
46. Cellular and viral determinants that regulate HIV-1 infection in macrophages
47. Reconstructing ancestral character states under Wagner parsimony
48. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
49. Impact of tuberculosis (TB) on HIV-1 activity in dually infected patients
50. Enhanced susceptibility of blood monocytes from patients with pulmonary tuberculosis to productive infection with human immunodeficiency virus type 1
51. Transcriptional activation of HIV by Mycobacterium tuberculosis in human monocytes
52. Generalized immune activation in pulmonary tuberculosis: Coactivation with HIV infection
53. Antiretroviral resistance mutations in human immunodeficiency virus type 1 reverse transcriptase and protease from paired cerebrospinal fluid and plasma samples
54. Matrix correlation tests support a single origin for modern humans
55. Molecular evidence for drug-induced compartmentalization of HIV-1 quasispecies in a patient with periodic changes to HAART
56. Viral dynamics in human immunodeficiency virus type 1 infection
57. Accelerated course of human immunodeficiency virus infection after tuberculosis
58. In vivo compartmentalization of human immunodeficiency virus: Evidence from the examination of Pol sequences from autopsy tissues
59. Mycobacterium tuberculosis enhances human immunodeficiency virus-1 replication by transcriptional activation at the long terminal repeat
60. Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: Evidence for viral compartmentalization and selection during sexual transmission