Exploration of novel motifs derived from mouse cDNA sequences

Genome Research

Volumn 12, Issue 3, 2002, Pages 367-378

  Kawaji, Hideya ^a,b   Schönbach, Christian ^c   Matsuo, Yo ^c   Kawai, Jun ^c   Okazaki, Yasushi ^c   Hayashizaki, Yoshihide ^c   Matsuda, Hideo ^a  

^a OSAKA UNIVERSITY   (Japan)

^b Nippon Telegraph and Telephone Software Corporation   (Japan)

^c RIKEN YOKOHAMA INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

1 ACYLGLYCEROPHOSPHOCHOLINE ACYLTRANSFERASE; AMINO ACID; COMPLEMENTARY DNA; GROWTH INHIBITOR; LEUCINE ZIPPER PROTEIN; MEMBRANE PROTEIN; PROTEIN SUBUNIT; SERINE PROTEINASE INHIBITOR;

ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; ANION TRANSPORT; ARTICLE; CONTROLLED STUDY; DENSITY; DNA SEQUENCE; DNA STRUCTURE; EMBL NUCLEOTIDE SEQUENCE DATABASE; FILTRATION; GENETIC CONSERVATION; GENETIC SCREENING; GENETIC TRANSCRIPTION; MAMMAL; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; ORTHOLOGY; PRIORITY JOURNAL; PROBABILITY; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN STRUCTURE; REDUNDANCY ANALYSIS; RETROVIRUS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SWISS-PROT;

MAMMALIA; RODENTIA; UNIDENTIFIED RETROVIRUS;

EID: 0036125391     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.193702     Document Type: Article

References (64)

1. The PHD finger: Implications for chromatin-mediated transcriptional regulation
2. Molecular characterization and tissue distribution of a new organic anion transporter subtype (oatp3) that transports thyroid hormones and taurocholate and comparison with oatp2
3. MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
4. Characterization of a human lysophosphatidic acid acyltransferase that is encoded by a gene located in the class III region of the human major histocompatibility complex
5. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
6. InterPro-an integrated documentation resource for protein families, domains, and functional sites
7. A natural classification of the basic helix-loop-helix class of transcription factors
8. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
9. Proteomics: New perspectives, new biomedical opportunities
10. The Pfam protein families database
11. Protein sequence motifs
12. Ready for a motif submission? A proposed checklist
13. MView: A web-compatible database search or multiple alignment viewer
14. Transport-dependent accessibility of a cytoplasmic loop cysteine in the human dopamine transporter
15. External cysteine residues in the serotonin transporter
16. ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
17. HNPCC-like cancer predisposition in mice through simultaneous loss of Msh3 and Msh6 mismatch-repair protein functions
18. A distinct seven-residue trigger sequence is indispensable for proper coiled-coil formation of the human macrophage scavenger receptor oligomerization domain
19. Amino-acid translation program for full-length cDNA sequences with frame-shift errors
20. ANTHEPROT 2.0: A three-dimensional module fully coupled with protein sequence analysis methods
21. Genomic structure of the human ING1 gene and tumor-specific mutations detected in head and neck squamous cell carcinomas
22. A novel candidate tumor suppressor, ING1, is involved in the regulation of apoptosis
23. Gene families: The taxonomy of protein paralogs and chimeras
24. Protein import into the nucleus: An integrated view
25. The PROSITE database, its status in 1999
26. Crystal structure of a pair of follistatin-like and EF-hand calcium-binding domains in BM-40
27. A tool for analyzing and annotating genomic sequences
28. The rapid generation of mutation data matrices from protein sequences
29. An autonomous folding unit mediates the assembly of two-stranded coiled coils
30. The cea10 gene encodes a secreted member of the murine carcinoembryonic antigen family and is expressed in the placenta, gastrointestinal tract and bone marrow
31. DSC: Public domain protein secondary structure predication
32. Maximum likelihood inference of protein phylogeny, and the origin of chloroplasts
33. The leucine zipper: A hypothetical structure common to a new class of DNA binding proteins
34. The DNA binding domain of the rat liver nuclear protein C/EBP is bipartite
35. Analysis of amino acid motifs diagnostic for the sn-glycerol-3-phosphate acyltransferase reaction
36. Three yeast proteins related to the human candidate tumor suppressor p33ING1 are associated with histone acetyltransferase activities
37. Predicting coiled coils from protein sequences
38. Classifying molecular sequences using a linkage graph with their pairwise similarities
39. Detection of conserved domains in protein sequences using a maximum-density subgraph algorithm
40. Selective activation of a discrete family of endogenous proviral elements in normal BALB/c lymphocytes
41. Evolution of N-terminal sequences of the vertebrate HOXA13 protein
42. PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization. 1999
43. Isolation of a multispecific organic anion and cardiac glycoside transporter from rat brain
44. Drosophila p53 is a structural and functional homolog of the tumor suppressor p53
45. Evidence that the leucine zipper is a coiled coil
46. Structure of the PHD zinc finger from human Williams-Beuren syndrome transcription factor
47. RefSeq and LocusLink: NCBI gene-centered resources
48. Functional annotation of a full-length mouse cDNA collection
49. PHD: Predicting one-dimensional protein structure by profile based neural networks
50. p24/ING1-ALT1 and p47/ING1-ALT2, distinct alternative transcripts of p33/ING1
51. Differential association of products of alternative transcripts of the candidate tumor suppressor ING1 with the mSin3/HDAC1 transcriptional corepressor complex
52. Molecular identification and characterization of novel members of the human organic anion transporter (OATP) family
53. Metabolism and evolution of Haemophilus influenzae deduced from a whole genome comparison with Escherichia coli
54. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
55. Organic anion transporters
56. Mouse RNA helicase II/Gu: cDNA and genomic sequences, chromosomal localization, and regulation of expression
57. Defective spectrin integrity and neonatal thrombosis in the first mouse model for severe hereditary elliptocytosis
58. Genomic organization and expression of the human MSH3 gene
59. Cloning and expression of two human lysophosphatidic acid acyltransferase cDNAs that enhance cytokine-induced signaling responses in cells
60. Statistics of local complexity in amino acid sequences and sequence databases
61. Coiled-coil trigger motifs in the 1B and 2B rod domain segments are required for the stability of keratin intermediate filaments
62. ATP-independent fatty acyl-coenzyme A synthesis from phospholipid: Coenzyme A-dependent transacylation activity toward lysophosphatidic acid catalyzed by acyl-coenzyme A:lysophosphatidic acid acyltransferase
63. Structure and regulation of the mouse ING1 gene. Three alternative transcripts encode two PHD finger proteins that have opposite effects on p53 function