Spontaneous mobilization of integrated recombinant adenoassociated virus in a cell culture model of virus latency

Virology

Volumn 294, Issue 1, 2002, Pages 151-169

  Musatov, Sergei A ^a   Dudus, Lorita ^a   Parrish, Christine M ^a   Scully, Tara A ^a   Fisher, Krishna J ^a  

^a TULANE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Circular AAV; Integration; Recombinant AAV; Spontaneous deletion

Indexed keywords

VIRUS VECTOR;

ADENO ASSOCIATED VIRUS; ARTICLE; BACTERIUM TRANSFORMATION; CONTROLLED STUDY; EMBRYO; ESCHERICHIA COLI; EXPERIMENTAL MODEL; GENE DELETION; GENE LOCUS; HUMAN; HUMAN CELL; HUMAN CELL CULTURE; LONG TERMINAL REPEAT; PRIORITY JOURNAL; RESTRICTION MAPPING; SEQUENCE ANALYSIS; VIRUS ASSEMBLY; VIRUS GENE; VIRUS GENOME; VIRUS LATENCY; VIRUS RECOMBINANT;

BACTERIA (MICROORGANISMS);

EID: 0036063796     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2001.1267     Document Type: Article

References (71)

1. Basic local alignment search tool
2. Adenovirus-associated defective virus particles
3. Adeno-associated virus Rep78 protein and terminal repeats enhance integration of DNA sequence into the cellular genome
4. Dissociation of carcinogen-induced SV40 DNA-amplification and amplification of AAV DNA in a chinese hamster cell line
5. Parvovirus replication
6. Rep-mediated nicking of the adeno-associated virus origin requires two biochemical activities, DNA helicse activity and transesterification
7. Some general questions about movable elements and their implications
8. Integration of the adeno-associated virus genome into cellular DNA in latently infected human Detroit 6 cells
9. Induction of circles of heterogenous sizes in carcinogen treated cells: Two-dimensional gel analysis of circular DNA molecules
10. Small polydispersed circular DNA (spcDNA) in human cells: Association with genomic instability
11. Change in quantity and size distribution of small circular DNAs during development of chicken bursa
12. Formation of adeno-associated virus circular genomes is differentially regulated by adenovirus E4 ORF6 and E2a gene expression
13. Circular intermediates of recombinant adeno-associated virus have defined structural characteristics responsible for long-term episomal persistence in muscle tissue
14. Adeno-associated virus (AAV) site-specific integration: Formation of AAV-AAVS1 junctions in an in vitro system
15. Evolution of a defective virus from a cellular defense mechanism
16. The evolution of defective and autonomous parvoviruses
17. Extrachromosomal circular copies of the eukaryotic transposable element copia in cultured Drosophila cells
18. Transposon-like sequences in extrachromosomal circular DNA from mouse thymocytes
19. The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons
20. Extrachromosomal circular DNAs and genomic sequence plasticity in eukaryotic cells
21. Recombinant junctions formed by site-specific integration of adeno-associated virus into an episome
22. Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-resistant mutants
23. Establishment and characterization of KB cell lines latently infected with adeno-associated virus type 1
24. Efficient synthesis of adeno-associated virus structural proteins requires both adenovirus DNA binding protein and VA1 RNA
25. Locations of adeno-virus genes required for the replication of adenovirus-associated virus
26. Characterization of cloned human alphoid satellite with an unusual monomeric construction: Evidence for enrichment in HeLa small polydisperse circular DNA
27. L1 sequences in HeLa extrachromosomal circular DNA: Evidence for circularization by homologous recombination
28. The impact of L1 retrotransposons on the human genome
29. Full-length human L1 insertions retain the capacity for high frequency retrotransposition in cultured cells
30. Some extrachromosomal circular DNAs containing the Alu family of dispersed repetitive sequences may be reverse transcripts
31. Structure of extrachromosomal circular DNAs containing both the Alu family of dispersed repetitive sequences and other regions of chromosomal DNA
32. Sequence repetition and genomic distribution of small polydisperse circular DNA purified from HeLa cells
33. Sequence organization of repetitive sequences enriched in small polydisperse circular DNAs from HeLa cells
34. Latent infection of KB cells with adeno-associated virus type 2
35. The recombination signals for adeno-associated virus site-specific integration
36. Nucleotide sequence of the inverted terminal repetition in adeno-associated virus DNA
37. Adeno-associated virus general transduction vectors: Analysis of proviral structures
38. Recombination mediates production of an extrachromosomal circular DNA containing a transposon-like human element, THE-1
39. Cloned extrachromosomal circular DNA copies of the human transposable element THE-1 are related predominantly to a single type of family member
40. Induction of circular episomes during rescue and replication of adeno-associated virus in experimental models of virus latency
41. Site-specific Integration in mammalian cells mediated by a new hybrid baculovirus - Adeno-associated virus vector
42. A transposon-like element in human DNA
43. IS911-mediated transpositional recombination in vitro
44. A dye-buoyant-density method for the detection and isolation of closed circular duplex DNA: The closed circular DNA in HeLa cells
45. Interspersed repetitive and tandemly repetitive sequences are differentially represented in extrachromosomal covalently closed circular DNA of human diploid fibroblasts
46. A cascade of adenovirus early functions is required for expression of adeno-associated virus
47. Adenovirus early gene regulation and the adeno-associated virus helper effect
48. Isolation of the closed circular form of the transposable element Tc1 in Caenorhabditis elegans
49. Extrachromosomal copies of transposon Tc1 in the nematode Caenorhabditis elegans
50. Extrachromosomal DNA in eukaryotes
51. A recombinant plasmid from which an infectious adeno-associated virus genome can be excised in vitro and its use to study viral replication
52. Discrete size classes of monkey extrachromosomal circular DNA containing the L1 family of long interspersed nucleotide sequences are produced by a general non-sequence specific mechanism
53. Vaccinia virus, herpes simplex virus, and carcinogens induce DNA amplification in a human cell line and support replication of a helpervirus dependent parvovirus
54. An intermediate in transposition of the conjugative transposon Tn916
55. Targeted integration of transfected and infected adeno-associated virus vectors containing the neomycin resistance gene
56. The origin of interspersed repeats in the human genome
57. Small polydisperse circular DNA of HeLa cells
58. Nucleotide sequence and organization of the adeno-associated virus 2 genome
59. Increase of extrachromosomal circular DNA in mouse 3T6 cells on perturbation of DNA synthesis: Implications for gene amplification
60. Partial purification of an enzyme from Saccharomyces cerevisiae that cleaves Holliday junctions
61. IS1-mediated intramolecular rearrangements: Formation of excised transposon circles and replicative deletions
62. Integration of deoxyribonucleic acid specific for rous sarcoma virus after infection of permissive and nonpermissive hosts
63. The importance of circular DNA in mammalian gene amplification
64. Resolution of synthetic Holliday structures by an extract of human cells
65. Rescue and replication signals of the adeno-associated virus 2 genome
66. In vitro rescue of an integrated hybrid adeno-associated virus/simian virus 40 genome
67. Developmental precise excision of Oxytricha trifallax telomere-bearing elements and formation of circles closed by a copy of the flanking target duplication
68. A novel 165-base-pair terminal repeat sequence is the sole cis requirement for the adeno-associated virus life cycle
69. Replication of adeno-associated virus in synchronized cells without the addition of helper virus
70. DNA amplification of adeno-associated virus as a response to cellular genotoxic stress
71. Cellular recombination pathways and viral terminal repeat hairpin structures are sufficient for adeno-associated virus integration in vivo and in vitro