Canine 5S rRNA: Nucleotide sequence and chromosomal assignment of its gene cluster in four canid species

Cytogenetic and Genome Research

Volumn 97, Issue 3-4, 2002, Pages 187-190

  Pienkowska, A ^a   Schelling, C ^b   Opiola, T ^c   Rozek, M ^c   Barciszewski, J ^c  

^a POZNA UNIVERSITY OF LIFE SCIENCES   (Poland)

^b ETH ZURICH   (Switzerland)

^c INSTITUTE OF BIOORGANIC CHEMISTRY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; RNA 5S; PRIMER DNA;

ANIMAL TISSUE; ARTICLE; CHROMOSOME ARM; CHROMOSOME MAP; CONTROLLED STUDY; DOG; FLUORESCENCE IN SITU HYBRIDIZATION; GENE ASSIGNMENT; GENE CLUSTER; GENE LOCUS; GENE MAPPING; LIVER; MAMMAL; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; ANIMAL; CHROMOSOME BANDING PATTERN; GENETICS; MULTIGENE FAMILY; RNA PROBE; SPECIES DIFFERENCE;

CANIDAE; CANIS FAMILIARIS; MAMMALIA; NYCTEREUTES PROCYONOIDES; PROCYON LOTOR; VULPES LAGOPUS; VULPES VULPES;

ANIMALS; BASE SEQUENCE; CHROMOSOME BANDING; CHROMOSOME MAPPING; DNA PRIMERS; DOGS; IN SITU HYBRIDIZATION, FLUORESCENCE; MULTIGENE FAMILY; RNA PROBES; RNA, RIBOSOMAL, 5S; SPECIES SPECIFICITY;

EID: 0036049337     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000066607     Document Type: Article

References (35)

1. Augustyniak H, Barciszewski J, Rafalski A, Zawielak J, Szyfter K: Phenylalanine tRNA of Lupinus luteus seeds. Phytochemistry 13:2679-2684 (1974).
2. Barciszewska MZ, Dirheimer G, Keith G: The nucleotide sequence of methionine elongator tRNA from wheat germ. Biochem biophys Res Commun 114:1161-1168 (1983).
3. Barciszewska MZ, Mashkova TD, Kisselev LL, Barciszewski J: The primary structure of maize and tobacco 5S rRNA. FEBS Lett 192:289-293 (1985).
4. Breen M, Jouquand S, Renier C, Mellersh CS, Hitte C, Holmes NG, Chéron A, Suter N, Vignaux F, Bristow AE, Priat C, McCann E, André C, Boundy S, Gitsham P, Thomas R, Bridge WL, Spriggs HF, Ryder EJ, Curson A, Sampson J, Ostrander EA, Binns MM, Galibert F: Chromosome-specific single locus FISH probes allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domesticated dog genome to all chromosomes. Genome Res 11:1784-1795 (2001).
5. Christensen K, Lomholt B, Hallenberg C, Nielsen KV: Mink 5S rRNA genes map to 2q in three loci suggesting conservation of synteny with human 1q. Hereditas 128:17-20 (1998).
6. Fischer PE, Holmes NG, Dickens HF, Thomas R, Binns MM, Nacheva EP: The application of FISH technique for physical mapping in the dog (Canis familiaris). Mammal Genome 7:37-41 (1996).
7. Graphodatsky AS, Yang F, O'Brien PCM, Serdukova N, Milne BS, Trifonov V, Ferguson-Smith MA: A comparative chromosome map of the Arctic fox, red fox and dog defined by chromosome painting and high resolution G-banding. Chrom Res 8:253-263 (2000).
8. Graphodatsky AS, Yang F, O'Brien PCM, Perelman P, Milne BS, Serdukova N, Kawada S-I, Ferguson-Smith MA: Phylogenetic implications of the 38 putative ancestral chromosome segments for four canid species. Cytogenet Cell Genet 92:243-247 (2001).
9. Howard-Peebles PN, Howell WM: Nucleolus organizer regions of the canine karyotype. Cytogenet Cell Genet 35:293-294 (1983).
10. Kopp E, Mayr B, Schleger W: Nucleolus organizer regions on chromosomes of the domestic dog. J Heredity 73:73 (1982).
11. Kost MV, Alimov AA, Sarafanov AG, Tikchomirova TP, Gumeniuk RR, Timofeeva MJ, Zelenin AV: 5S rRNA gene hybridizes to human chromosome 1 at two sites (1q42.11→q42.13 and 1q43). Cytogenet Cell Genet 68:82-84 (1995).
12. Lingaas F, Aarskaug T, Gerlach JA, Juneija RK, Fredholm M, Sampson J, Suter N, Holmes NG, Binns MM, Ryder EJ, Van Haeringen WA, Venta PJ, Brouillette JA, Yuzbasiyan-Gurkan V, Wilton AN, Predbacka P, Koskinen M, Dunner S, Parra D, Schmutz S, Schelling C, Schlapfer J, Dolf G: A canine linkage map: 39 linkage groups. J Anim Breed Genet 118:3-19 (2001).
13. Lomholt B, Christensen K, Hallenberg C, Frederiksen S: Porcine 5S rRNA genes map to 14q23 revealing syntenic relation to human HSPA6- and 7. Mammal Genome 6:439-441 (1995a).
14. Lomholt B, Frederiksen S, Nederby-Nielsen C, Hallenberg C: Additional assignment of the human 5S rRNA genes to chromosome region 1q31. Cytogenet Cell Genet 70:76-79 (1995b).
15. Lomholt B, Frederiksen S, Jensen LR, Christensen K, Hallenberg C: 5S rRNA genes in Macaca fascicularis map to chromosome 1p in three loci. Mammal Genome 6:451-453 (1996).
16. Mäkinen A, Gustavsson I, Switonski M, Takagi N: The standard karyotype of the blue fox (Alopex lagopus). Hereditas 103:33-38 (1985a).
17. Mäkinen A, Kuokkanen M-T, Gustavsson I, Isakova GK, Takagi N: The Standard karyotype of the silver fox (Vulpes fulvus Desm.). Hereditas 103:171-176 (1985b).
18. Mäkinen A, Zijlstra C, deHaan NA, Mellink CHM, Bosma AA: Localization of 18S + 28S and 5S ribosomal RNA genes in the dog by fluorescence in situ hybridization. Cytogenet Cell Genet 78:231-235 (1997).
19. Matsuda Y, Moriwaki K, Chapman VM, Hoi-Sen Y, Akbarzadeh J, Suzuki H: Chromosomal mapping of mouse 5S rRNA genes by direct R-banding fluorescence in situ hybridization. Cytogenet Cell Genet 66:246-249 (1994).
20. Mayr B, Geber G, Auer H, Kalat M, Schleger W: Heterochromatin composition and nucleolus organizer activity in four canid species. Can J Genet Cytol 28:744-753 (1986).
21. Mellink CHM, Bosma AA, de Haan NA, Zijlstra C: Physical localization of 5S rRNA genes in the pig by fluorescence in situ hybridization. Hereditas 124:95-97 (1996).
22. Pienkowska A, Switonski M: Chromosomal localization and activity of nucleolar organizer regions in the dog (Canis familiaris). Genet Sel Evol 30:79-84 (1998).
23. Pinkel D, Straume T, Gray JW: Cytogenetic analysis using quantitative, high-sensitivity fluorescence hybridization. Proc natl Acad Sci, USA 83:2934-2938 (1986).
24. Rogalska-Niznik N, Schelling C, Dolf G, Schlapfer J, Pienkowska A, Switonski M: Localisation of three canine microsatellites on the Arctic fox (Alopex lagopus) chromosomes. Vet Med-Czech 45:314-316 (2000).
25. Specht T, Szymanski M, Barciszewska MZ, Barciszewski J, Erdman VA: Compilation of 5S rRNA and 5S rRNA gene sequences. Nucl Acids Res 25:96-97 (1997).
26. Suzuki H, Sakurai S, Matsuda Y: Rat 5S rDNA spacer sequences and chromosomal assignment of the genes to the extreme terminal region of chromosome 19. Cytogenet Cell Genet 72:1-4 (1996).
27. Switonski M, Reimann N, Bosma AA, Long S, Bartnitzke S, Pienkowska A, Moreno-Milan MM, Fischer P: Report on the progress of standardization of the G-banded canine (Canis familiaris) karyotype. Chrom Res 4:306-309 (1996).
28. Szymanski M, Barciszewska MZ, Barciszewski J, Erdmann VA: 5S ribosomal RNA database Y2K. Nucl Acids Res 28:166-167 (2000a).
29. Szymanski M, Barciszewska MZ, Erdmann VA, Barciszewski J: An analysis of G-U base pair occurrence in eukaryotic 5S rRNAs. Mol Biol Evol 17:1194-1198 (2000b).
30. Uechi T, Tanaka T, Kenmochi N: A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders. Genomics 72:223-230 (2001).
31. Ward OG, Wurster-Hill DH, Ratty FJ, Song Y: Comparative cytogenetics of Chinese and Japanese raccoon dogs, Nyctereutes procyonoides. Cytogenet Cell Genet 45:177-186 (1987).
32. Wiegant J, Ried T, Nederlof PM, van der Ploeg M, Tanke HJ, Raap AK: In situ hybridization with fluoresceinated DNA. Nucl Acids Res 19:3237-3241 (1991).
33. Wurster-Hill DH, Ward OG, Kada H, Whittemore S: Banded chromosome studies and B chromosomes in wild-caught Japanese raccoon dogs, Nyctereutes procyonoides viverrinus. Cytogenet Cell Genet 42:85-93 (1986).
34. Yang F, O'Brien PCM, Milne BS, Graphodatsky AS, Solanky N, Trifonow V, Rens W, Sargan D, Ferguson-Smith MA: A complete comparative chromosome map for the dog, red fox and human and its integration with canine genetic maps. Genomics 62:189-202 (1999).
35. Yang F, Milne BS, Schelling C, Dolf G, Schläpfer J, Switonski M, Ladon D. Pienkowska A, Bosma AA, Sargan DR, Ferguson-Smith MA: Chromosome identification and assignment of DNA clones in the dog using a red fox and dog comparative map. Chrom Res 8:93-100 (2000).