New genus-specific primers for the PCR identification of novel isolates of the genera Nocardiopsis and Saccharothrix

International Journal of Systematic and Evolutionary Microbiology

Volumn 52, Issue 4, 2002, Pages 1411-1421

  Salazar, Oscar ^a   González, Ignacio ^a   Genilloud, Olga ^a  

^a Medical affairs Merck sharp and Dohme ltd   (Spain)

Author keywords

16S rDNA sequences; Genus specific primers; Nocardiopsis; PCR; Saccharothrix

Indexed keywords

DNA 16S; PRIMER DNA; FATTY ACID; RIBOSOME DNA; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; GENE AMPLIFICATION; GENETIC VARIABILITY; MORPHOLOGY; NOCARDIOPSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SACCHAROTHRIX; UNINDEXED SEQUENCE; VALIDATION PROCESS; WILD TYPE; ACTINOMYCETALES; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; EVALUATION; GENETICS; METHODOLOGY; MOLECULAR GENETICS; SPECIES DIFFERENCE;

ACTINOMYCETALES; DNA PRIMERS; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ACTINOBACTERIA (CLASS); ACTINOMYCETALES; BACTERIA (MICROORGANISMS); NOCARDIOPSIS; SACCHAROTHRIX; UNCULTURED ACTINOMYCETE;

EID: 0036022495     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02032-0     Document Type: Article

References (37)

1. Nocardiopsis halophila sp. nov., a new halophilic actinomycete isolated from soil
2. Nocardiopsis halotolerans sp. nov., isolated from salt marsh soil in Kuwait
3. T): A proposal to transfer this strain to the genus Nonomuraea as Nonomuraea longicatena sp. nov
4. Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern
5. Nocardiopsis tropica sp. nov., Nocardiopsis trehalosi sp. nov., nom. rev. and Nocardiopsis dassonvillei subsp. albirubida subsp. nov., comb. nov
6. Confidence intervals on phylogenies: An approach using the bootstrap
7. Transfer of five Nocardiopsis species to the genus Saccharothrix Labeda et al. 1984
8. Chemotaxonomy and numerical taxonomy of the genus Nocardiopsis Meyer 1976
9. Nocardiopsis compostus sp. nov., from the atmosphere of a composting facility
10. Fatty acid and menaquinone analysis of actinomycetes and related organisms
11. The genus Nocardiopsis
12. Transfer of "Nocardia aerocolonigenes" (Shinobu and Kawato 1960) Pridham 1970 into the genus Saccharothrix Labeda, Testa, Lechevalier, and Lechevalier 1984 as Saccharothrix aerocolonigenes sp. nov
13. Crossiella gen. nov., a new genus related to Streptoalloteichus
14. Phylogenetic analysis of Saccharothrix and related taxa: Proposal for Actinosynnemataceae fam. nov
15. Amendment of the genus Saccharothrix Labeda et al. 1984 and descriptions of Saccharothrix espanaensis sp. nov., Saccharothrix cryophilis sp. nov., and Saccharothrix mutabilis comb. nov
16. Saccharothrix texasensis sp. nov. and Saccharothrix waywayandensis sp. nov
17. Saccharothrix: A new genus of the Actinomycetales related to Nocardiopsis
18. Revival of the genus Lentzea and proposal for Lechevalieria gen. nov
19. 16S/23S rRNA sequencing
20. Chemotaxonomy of aerobic actinomycetes: Phospholipid composition
21. Isolation of DNA from fungal mycelia and single spores
22. Saccharothrix violacea sp. nov., isolated from a gold mine gave, and Saccharothrix albidocapillata comb. nov
23. Exploration of Actinomycetes diversity using ribosomal RNA sequences
24. Genus Nocardiopsis, a new genus of the order Actinomycetales
25. Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids
26. New genus-specific primers for the PCR identification of members of the genera Pseudonocardia and Saccharopolyspora
27. Isolation of toxicogenic Nocardiopsis strains from indoor environments and description of two new Nocardiopsis species, N. exhalans sp. nov. and N. umidischolae sp. nov
28. Organization and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens
29. DNA-DNA reassociation and chemotaxonomic studies on Actinomadura, Microbispora, Microtetraspora, Micropolyspora and Nocardiopsis
30. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: Proposal of Nocardiopsaceae fam. nov
31. New genus-specific primers for the PCR identification of the genus Saccharomonospora and evaluation of the microbial diversity of wild-type isolates of Saccharomonospora detected from soil DNAs
32. Development and application of nucleic acid probes
33. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
34. A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia
35. A new actinomycete species, Nocardiopsis lucentensis sp. nov
36. Description of Nocardiopsis synnemataformans sp. nov., elevation of Nocardiopsis alba subsp. prasina to Nocardiopsis prasina comb. nov., and designation of Nocardiopsis antarctica and Nocardiopsis alborubida as synonyms of Nocardiopsis dassonvillei