Basic principles of MRI and morphometry studies of human brain development

Developmental Science

Volumn 5, Issue 3, 2002, Pages 268-278

  Kennedy, David N ^a   Makris, Nikos ^a   Herbert, Martha R ^a   Takahashi, Tsutomu ^a   Caviness Jr , Verne S ^a  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0036021671     PISSN: 1363755X     EISSN: None     Source Type: Journal    
DOI: 10.1111/1467-7687.00366     Document Type: Article

References (61)

1. Aksoy, F., & Lev, M. (2000). Dynamic contrast-enhanced brain perfusion imaging: technique and clinical applications. Seminars in Ultrasound, CT and MR, 21 (6), 462-477.
2. Basser, P.J., Mattiello, J., & LeBihan, D. (1994). Estimation of the effective self-diffusion tensor from the NMR spin echo. Journal of Magnetic Resonance, Series B, 103, 247-254.
3. Belliveau, J.W., Kennedy, D.N., McKinstry, R.C., Buchbinder, B.R., Weisskoff, R.M., Cohen, M.S., Vevea, J.M., Brady, T.J., & Rosen, B.R. (1991). Functional mapping of the human visual cortex by magnetic resonance imaging. Science, 254, 716-719.
4. Bowden, D., & Martin, R. (1995). NeuroNames Brain Hierarchy. Neuroimage, 2 (1), 63-83.
5. Caputo, G., Kondo, C., & Higgins, C. (1993). Magnetic resonance angiography and blood flow quantification. American Journal of Cardiac Imaging, 7 (3), 233-242.
6. Casey, B., Giedd, J., & Thomas, K. (2000). Structural and functional brain development and its relation to cognitive development. Biological Psychology, 54 (1-3), 241-257.
7. Casey, B., Tottenham, N., & Fossella, J. (2002). Clinical, imaging, lesion and genetic approaches for studying the development of cognitive control. Developmental Psychobiology, 40 (3), 237-254.
8. Caviness, V.S.J., Kennedy, D.N., Bates, J., & Makris, N. (1996). The developing human brain: A morphometric profile. In R.W. Thatcher, G.R. Lyon, J. Rumsey & N. Krasnegor (Eds.), Developmental neuroimaging: Mapping the development of brain and behavior (pp. 3-14). New York: Academic Press.
9. Caviness, V.S.J., Kennedy, D.N., Richelme, C., Rademacher, R., & Filipek, P. (1996). The human brain age 7-11 years: A volumetric analysis based upon magnetic resonance images. Cerebral Cortex, 6 (5), 726-736.
10. Caviness, V.S.J., Lange, N.T., Makris, N., Herbert, M.R., & Kennedy, D.N. (1999). MRI-based brain volumetrics: Emergence of a developmental brain science. Brain and Development, 21 (5), 289-295.
11. Chung, M., Worsley, K., Paus, T., Cherif, C., Collins, D., Giedd, J., Rapoport, J., & Evans, A. (2001). A unified statistical approach to deformation-based morphometry. Neuroimage, 14 (3), 595-606.
12. Clarke, L., Velthuizen, R., Camacho, M., Heine, J., Vaidyanathan, M., Hall, L., Thatcher, R., & Silbiger, M. (1995). MRI segmentation: Methods and applications. Magnetic Resonance Imaging, 13 (3), 343-368.
13. Collins, D., Holmes, C., Peters, T., & Evans, A. (1995). Automatic 3-D model-based neuroanatomical segmentation. Human Brain Mapping, 3, 190-208.
14. Dale, A., Fischl, B., & Sereno, M. (1999). Cortical surface-based analysis. I. Segmentation and surface reconstruction. Neuroimage, 9, 179-194.
15. Davatzikos, C., & Bryan, R.N. (1996). Using a deformable surface model to obtain a shape representation of the cortex. IEEE Transactions on Medical Imaging, 15 (6), 785-795.
16. DeQuardo, J., Keshavan, M., Bookstein, F., Bagwell, W., Green, W., Sweeney, J., Haas, G., Tandon, R., Schooler, N., & Pettegrew, J. (1999). Landmark-based morphometric analysis of first-episode schizophrenia. Biological Psychiatry, 45 (10), 1321-1328.
17. Durston, S., Hulshoff, P.H., Casey, B., Giedd, J., Buitelaar, J., & van Engeland, H. (2001). Anatomical MRI of the developing human brain: What have we learned? Journal of the American Academy of Child and Adolescent Psychiatry, 40 (9), 1012-1020.
18. Filipek, P.A., Richelme, C., Kennedy, D.N., & Caviness, V., Jr. (1994). The young adult human brain: An MRI-based morphometric analysis. Cerebral Cortex, 4 (4), 344-360.
19. Fischl, B., Sereno, M., & Dale, A. (1999). Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system. Neuroimage, 9, 195-207.
20. Fischl, B., Sereno, M., Tootell, R., & Dale, A. (1999). High-resolution intersubject averaging and a coordinate system for the cortical surface. Human Brain Mapping, 8, 272-284.
21. Free, S., O'Higgins, P., Maudgil, D., Dryden, I., Lemieux, L., Fish, D., & Shorvon, S. (2001). Landmark-based morphometrics of the normal adult brain using MRI. Neuroimage, 13 (5), 801-813.
22. Giedd, J., Blumenthal, J., Jeffries, N., Castellanos, F., Liu, H., Zijdenbos, A., Paus, T., Evans, A., & Rapoport, J. (1999). Brain development during childhood and adolescence: A longitudinal MRI study. Nature Neuroscience, 2 (10), 861-863.
23. Giedd, J.N., Snell, J.W., Lange, N., Rajapakse, J.C., Casey, B.J., Kozuch, P.L., Vaituzis, A.C., Vauss, Y.C., Hamburger, S.D., Kaysen, D., & Rapoport, J.L. (1996). Quantitative magnetic resonance imaging of human brain development: Ages 4-18. Cerebral Cortex, 6, 551-560.
24. Guimaraes, A., Baker, J., Jenkins, B., Lee, P., Weisskoff, R., Rosen, B., & Gonzalez, R. (1999). Echoplanar chemical shift imaging. Magnetic Resonance in Medicine, 41 (5), 877-882.
25. Haacke, E., Brown, R., Thompson, M., & Venkatesan, R. (1999). Magnetic resonance imaging: Physical principles and sequence design. New York: Wiley.
26. Hinshaw, W.S., & Lent, A.H. (1983). An introduction to NMR imaging: from the Bloch equation to the imaging equation. Proceedings of IEEE, 71 (3), 338-350.
27. Hogan, R., Bucholz, R., Choudhuri, I., Mark, K., Butler, C., & Joshi, S. (2000). Shape analysis of hippocampal surface structure in patients with unilateral mesial temporal sclerosis. Journal of Digital Imaging, 13 (2 Suppl. 1), 39-42.
28. Jenkins, B.G., Chen, Y.I., Kuestermann, E., Makris, N.M., Nguyen, T.V., Kraft, E., Brownell, A.L., Rosas, H.D., Kennedy, D.N., Rosen, B.R., Koroshetz, W.J., & Beal, M.F. (1999). An integrated strategy for evaluation of metabolic and oxidative defects in neurodegenerative illness using magnetic resonance techniques. Annals of the New York Academy of Science, 893, 214-242.
29. Kapur, T., Grimson, W., Wells, W., & Kikinis, R. (1996). Segmentation of brain tissue from magnetic resonance images. Medical Image Analysis, 1 (2), 109-127.
30. Kennedy, D., Caviness, V., & Makris, N. (1996). Structural morphometry in the developing brain. In R.W. Thatcher, G.R. Lyon, J. Rumsey & N. Krasnegor (Eds.), Developmental neuroimaging: Mapping the development of brain and behavior. New York: Academic Press.
31. Kennedy, D.N., Filipek, P.A., & Caviness, V.S. (1989). Anatomic segmentation and volumetric calculations in nuclear magnetic resonance imaging. IEEE Transactions on Medical Imaging, 8, 1-7.
32. Kennedy, D., Lange, N., Makris, N., Bates, J., & Caviness, V. (1998). Gyri of the human neocortex: An MRI-based analysis of volumes and variance. Cerebral Cortex, 8 (4), 372-384.
33. Kikinis, R., Guttmann, C., Metcalf, D., Wells, W., Ettinger, H.L., Weiner, H., & Jolesz, F. (1999). Quantitative follow-up of patients with multiple sclerosis using MRI: Technical aspects. Journal of Magnetic Resonance Imaging, 9, 519-530.
34. Kovacs, I., Feher, A., & Julesz, B. (1998). Medial-point description of shape: A representation for action coding and its psychophysical correlates. Vision Research, 38 (15-16), 2323-2333.
35. Kwong, K.K., Belliveau, J.W., Chesler, D.A., Goldberg, I.E., Weisskoff, R.M., Poncelet, B.P., Kennedy, D.N., Hoppel, B.E., Cohen, M.S., Turner, R., Cheng, H.M., Brady, T.J., & Rosen, B.R. (1992). Dynamic magnetic resonance imaging of human brain activity during primary sensory stimulation. Proceedings of the National Academy of Science, USA, 89, 5675-5679.
36. McInerney, T., & Terzopoulos, D. (1996). Deformable models in medical image analysis: A survey. Medical Image Analysis, 1 (2), 91-108.
37. Makris, N., Meyer, J., Bates, J., Caviness, V.S. Jr., & Kennedy, D.N. (1999). MRI-based topographic parcellation of human cerebral white matter and nuclei: II. Rationale and applications with systematics of cerebral connectivity. Neuroimage, 9 (1), 17-45.
38. Makris, N., Worth, A.J., Sorensen, A.G., Papadimitriou, G.M., Wu, O., Reese, T.G., Wedeen, V., Davis, T., Stakes, J.W., Caviness, V.S., Kaplan, E., Rosen, B., Pandya, D.N., & Kennedy, D.N. (1997). Morphometry of in vivo human white matter association pathways with diffusion-weighted magnetic resonance imaging. Annals of Neurology, 42, 951-962.
39. Martin, R., & Bowden, D. (1996). A stereotaxic template atlas of the macaque brain for digital imaging and quantitative neuroanatomy. Neuroimage, 4 (2), 119-150.
40. Neil, J., Shiran, S., McKinstry, R., Schefft, G., Snyder, A., Almli, C., Akbudak, E., Aronovitz, J., Miller, J., Lee, B., & Conturo, T. (1998). Normal brain in human newborns: Apparent diffusion coefficient and diffusion anisotropy measured by using diffusion tensor MR imaging. Radiology, 209 (1), 57-66.
41. Ogawa, S., Tank, D., Menon, R., Ellermann, J., Kim, S., Merkle, H., & Ugurbil, K. (1992). Intrinsic signal changes accompanying sensory stimulation: Functional brain mapping with magnetic resonance imaging. Proceedings of the National Academy of Science, USA, 89 (13), 5951-5955.
42. Paus, T., Zijdenbos, A., Worsley, K., Collins, D., Blumenthal, J., Giedd, J., Rapoport, J., & Evans, A. (1999). Structural maturation of neural pathways in children and adolescents: In vivo study. Science, 283 (5409), 1908-1911.
43. Pierpaoli, C., & Basser, P. (1996). Toward a quantitative assessment of diffusion anisotropy. Magnetic Resonance in Medicine, 36, 893-906.
44. Rademacher, J., Caviness, V.S., Steinmetz, H., & Galaburda, A.M. (1993). Topographical variation of the human primary cortices: Implications for neuroimaging, brain mapping and neurobiology. Cerebral Cortex, 3, 313-329.
45. Rademacher, J., Galaburda, A.M., Kennedy, D.N., Filipek, P.A., & Caviness, V.S. (1992). Human cerebral cortex: Localization, parcellation, and morphometry with magnetic resonance imaging. Journal of Cognitive Neuroscience, 4, 352-374.
46. Roessler, E., & Muenke, M. (2001). Midline and laterality defects: Left and right meet in the middle. Bioessays, 23 (10), 888-900.
47. Rosen, B., Aronen, H., Kwong, K., Belliveau, J., Hamberg, L., & Fordham, J. (1993). Advances in clinical neuroimaging: Functional MR imaging techniques. Radiographics, 13 (4), 889-896.
48. Rosen, B., Belliveau, J., Aronen, H., Kennedy, D., Buchbinder, B., Fischman, A., Graber, M., Glas, J., Weisskoff, R., & Cohen, M. (1991). Susceptibility contrast imaging of cerebral blood volume: Human experience. Magnetic Resonance in Medicine, 22 (2), 293-299.
49. Ross, B., & Michaelis, T. (1994). Clinical applications of magnetic resonance spectroscopy. Magnetic Resonance Quarterly, 10 (4), 191-247.
50. Simon, E., & Barkovich, A. (2001). Holoprosencephaly: New concepts. Magnetic Resonance Imaging Clinics of North America, 9 (1), 149-164, viii-ix.
51. Simon, E., Hevner, R., Pinter, J., Clegg, N., Delgado, M., Kinsman, S., Hahn, J., & Barkovich, A. (2001). The dorsal cyst in holoprosencephaly and the role of the thalamus in its formation. Neuroradiology, 43 (9), 787-791.
52. Simon, E., Hevner, R., Pinter, J., Clegg, N., Miller, V., Kinsman, S., Hahn, J., & Barkovich, A. (2000). Assessment of the deep gray nuclei in holoprosencephaly. American Journal of Neuroradiology, 21 (10), 1955-1961.
53. Sudikoff, S., & Banasiak, K. (1998). Techniques for measuring cerebral blood flow in children. Current Opinions in Pedriatics, 10 (3), 291-298.
54. Talairach, J., Szikla, G., & Tournoux, P. (1967). Atlas d'anatomie stereotaxique du telencephale. Paris: Masson.
55. Talairach, J., & Tournoux, P. (1988). Co-planar stereotaxic atlas of the human brain. New York: Thieme Medical Publishers.
56. Thompson, P., & Toga, A.W. (1996). A surface-based technique for warping three-dimensional images of the brain. IEEE Transactions on Medical Imaging, 15 (4), 402-417.
57. Thompson, P.M., Giedd, J.N., Woods, R.P., MacDonald, D., Evans, A.C., & Toga, A.W. (2000). Growth patterns in the developing brain detected by using continuum mechanical tensor maps. Nature, 404, 190-193.
58. Thompson, P.M., MacDonald, D., Mega, M.S., Holmes, C.J., Evans, A.C., & Toga, A.W. (1997). Detection and mapping of abnormal brain structure with a probabilistic atlas of cortical surfaces. Journal of Computer Assisted Tomography, 21 (4), 567-581.
59. Viergever, M., Maintz, J., Niessen, W., Noordmans, H., Pluim, J., Stokking, R., & Vincken, K. (2001). Registration, segmentation, and visualization of multimodal brain images. Computerized Medical Imaging and Graphics, 25 (2), 147-151.
60. Watkins, K., Paus, T., Lerch, J., Zijdenbos, A., Collins, D., Neelin, P., Taylor, J., Worsley, K., & Evans, A. (2001). Structural asymmetries in the human brain: A voxel-based statistical analysis of 142 MRI scans. Cerebral Cortex, 11 (9), 868-877.
61. Wells, W.M., Grimson, W.E.L., Kikinis, R., & Jolesz, F.A. (1996). Adaptive segmentation of MRI data. IEEE Transactions on Medical Imaging, 15 (4), 429-442.