Reactivity of bulged bases in duplex DNA with redox-active nickel and cobalt complexes

Supramolecular Chemistry

Volumn 14, Issue 2-3, 2002, Pages 121-126

  Cai, Jin ^a   Muller, James G ^a   Burrows, Cynthia J ^a  

^a UNIVERSITY OF UTAH   (United States)

Author keywords

DNA Bulges; Nickel comples; Oxidation

Indexed keywords

BASE; COBALT COMPLEX; DNA; DOUBLE STRANDED DNA; NICKEL COMPLEX; OLIGODEOXYNUCLEOTIDE DERIVATIVE; OXIDIZING AGENT; RNA;

ARTICLE; CHEMICAL ANALYSIS; DNA DETERMINATION; DNA STRUCTURE; OXIDATION REDUCTION REACTION; REACTION ANALYSIS; RNA STRUCTURE;

EID: 0036000409     PISSN: 10610278     EISSN: None     Source Type: Journal    
DOI: 10.1080/10610270290026013     Document Type: Article

References (35)

1. Chen, X., Rokita, S.E. and Burrows, C.J. (1991), J. Am. Chem. Soc. 113, 5884-5886.
2. Chen, X., Burrows, C.J. and Rokita, S.E. (1992), J. Am. Chem. Soc. 114, 322-325.
3. Muller, J.G., Chen, X., Dadiz, A.C., Rokita, S.E. and Burrows, C. (1993), J. Pure Appl. Chem. 65, 545-550.
4. Muller, J.G., Chen, X., Dadiz, A.C., Rokita, S.E. and Burrows, C.J. (1992), J. Am. Chem. Soc. 114, 6407-6411.
5. Rokita, S.E. and Burrows, C. (2000), Current Protocols in Nucleic Acid Chemistry, 6.4.1-6.4.7.
6. Woodson, S.A. and Crothers, D.M. (1988), Biochemistry 27, 436-445.
7. Shih, H.-C., Tang, N., Burrows, C.J. and Rokita, S.E. (1998), J. Am. Chem. Soc. 120, 3284-3288.
8. Chen, X., Woodson, S.A., Burrows, C.J. and Rokita, S.E. (1993), Biochemistry 32, 7610-7616.
9. Burrows, C.J. and Rokita, S.E. (1994), Acc. Chem. Res. 27, 295-301.
10. Shih, H.-C., Kassahun, H., Burrows, C.J. and Rokita, S.E. (1999), Biochemistry 38, 15034-15042.
11. Wurdeman, R.L., Douskey, M.C. and Gold, B. (1993), Nucleic Acids Res. 21, 4975-4980.
12. Schmidt, M., Zheng, P. and Delihas, N. (1995), Biochemistry 34, 3621-3631.
13. Chen, X., Chamorro, M., Lee, S.I., Shen, L.X., Hines, J.V., Tinoco, Jr, I. and Varmus, H.E. (1995), EMBO J. 14, 842-852.
14. Butcher, S.E. and Burke, J.M. (1994), J. Mol. Biol. 244, 52-63.
15. Hickerson, R.P., Watkins-Sims, C.D., Burrows, C.J., Atkins, J.F., Gesteland, R.F. and Felden, B. (1998), J. Mol. Biol. 279, 577-587.
16. Burrows, C.J. and Rokita, S.E. (1996) In: Sigel, A. and Sigel, H., eds, Metal Ions In Biological Systems, M. Dekker, New York, pp 537-559.
17. Muller, J.G., Zheng, P., Rokita, S.E. and Burrows, C.J. (1996), J. Am. Chem. Soc. 118, 2320-2325.
18. Tang, N., Muller, J.G., Burrows, C.J. and Rokita, S.E. (1999), Biochemistry 38, 16648-16654.
19. Burrows, C.J., Muller, J.G., Shih, H.-C. and Rokita, C.J. (1995) In: Siegel, J.S., ed, Supramolecular Stereochemistry (Kluwer, Dordrecht), pp 57-62.
20. Muller, J.G., Hickerson, R.P., Perez, R.J. and Burrows, C.J. (1997), J. Am. Chem. Soc. 119, 1501-1506.
21. Burrows, C.J. and Muller, J.G. (1998), Chem. Rev. 98, 1109-1151.
22. Cai, J., MS Thesis, University of Utah (UT).
23. Karn, J.L. and Busch, D.H. (1969), Inorg. Chem. 8, 1149-1153.
24. Rubin, C.M. and Schmid, C.W. (1980), Nucleic Acids Res. 8, 4613-4619.
25. Saito, I., Takayama, M., Sugiyama, H. and Nakatani, K. (1995), J. Am. Chem. Soc. 117, 6406-6407.
26. Morden, K.M., Gunn, B.M. and Maskos, K. (1990), Biochemistry 29, 8835-8845.
27. Muller, J.G., Hickerson, R.P., Perez, R.J. and Burrows, C.J. (1997), J. Am. Chem. Soc. 119, 1501-1506.
28. Ross, S.A. and Burrows, C.J. (1996), Nucleic Acids Res. 24, 5062-5063.
29. Rosen, M.A., Live, D. and Patel, D.J. (1992), Biochemistry 31, 4004-4014.
30. Kalnik, M.W., Norman, D.G., Zaforski, M.G., Swann, P.F. and Patel, D.J. (1989), Biochemistry 28, 294-303.
31. Streisinger, G., Okada, Y., Emrich, J., Newton, J., Tsugita, A., Terzaghi, E. and Ino, M. (1966), Cold Spring Harbor Symp. Quant. Biol. 31, 77-84.
32. Streisinger, G. and Owen, J. (1985), Genetics 109, 633-659.
33. Woodson, S.A. and Crothers, D.M. (1988), Biochemistry 27, 8904-8914.
34. Nelson, J.W. and Tinoco, I. (1985), Biochemistry 24, 6416-6421.
35. Nakatani, K., Sando, S. and Saito, I. (2000), J. Am. Chem. Soc. 122, 2172-2177.