Discrimination between paralogs using microarray analysis: Application to the Yap1p and Yap2p transcriptional networks

Molecular Biology of the Cell

Volumn 13, Issue 5, 2002, Pages 1608-1614

  Cohen, Barak A ^a   Pilpel, Yitzhak ^a   Mitra, Robi D ^a   Church, George M ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BZIP TRANSCRIPTION FACTOR; FUNGAL DNA; REACTIVE OXYGEN METABOLITE; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; YAP1P TRANSCRIPTION FACTOR; YAP2P TRANSCRIPTION FACTOR; CAD1 PROTEIN, S CEREVISIAE; CADMIUM; DNA BINDING PROTEIN; HYDROGEN PEROXIDE; SACCHAROMYCES CEREVISIAE PROTEIN; YAP1 PROTEIN, S CEREVISIAE;

ARTICLE; BINDING SITE; CONTROLLED STUDY; DETOXIFICATION; DNA BINDING; DNA DETERMINATION; DNA MICROARRAY; EUKARYOTE; EVOLUTION; GENE CONTROL; GENE DUPLICATION; GENE FUNCTION; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; NONHUMAN; PARALOGY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN STABILITY; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHENOTYPE; PHYSIOLOGY; YEAST;

CADMIUM; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; HYDROGEN PEROXIDE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; PROMOTER REGIONS (GENETICS); SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, NON-P.H.S.; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; YEASTS; SACCHAROMYCES CEREVISIAE PROTEINS;

SACCHAROMYCES CEREVISIAE;

EID: 0036000001     PISSN: 10591524     EISSN: None     Source Type: Journal    
DOI: 10.1091/mbc.01-10-0472     Document Type: Article

References (25)

1. Overexpression of YAP2, coding for a new yAP protein, and YAP1 in Saccharomyces cerevisiae alleviates growth inhibition caused by 1,10-phenanthroline
2. Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
3. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
4. Specific components of the SAGA complex are required for Gcn4- and Gcr1-mediated activation of the his4-912delta promoter in Saccharomyces cerevisiae
5. Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions
6. Genomic expression programs in the response of yeast cells to environmental changes
7. Yeast glutathione reductase is required for protection against oxidative stress and is a target gene for yAP-1 transcriptional regulation
8. Exploring expression data: Identification and analysis of coexpressed genes
9. Saccharomyces cerevisiae YDR1, which encodes a member of the ATP-binding cassette (ABC) superfamily, is required for multidrug resistance
10. Stress-induced transcriptional activation mediated by YAP1 and YAP2 genes that encode the Jun family of transcriptional activators in Saccharomyces cerevisiae
11. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
12. Functional discovery via a compendium of expression profiles
13. YAP1 dependent activation of TRX2 is essential for the response of Saccharomyces cerevisiae to oxidative stress by hydroperoxides
14. MIPS: A database for genomes and protein sequences
15. Gene-target recognition among members of the myc superfamily, and implications for oncogenesis
16. Sequence logos: A new way to display consensus sequences
17. The PAR1 (YAP1/SNQ3) gene of Saccharomyces cerevisiae, a c-jun homologue, is involved in oxygen metabolism
18. The role of the YAP1 and YAP2 genes in the regulation of the adaptive oxidative stress responses of Saccharomyces cerevisiae
19. Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli
20. Systematic determination of genetic network architecture
21. Cadmium tolerance mediated by the yeast AP-1 protein requires the presence of an ATP-binding cassette transporter-encoding gene, YCF1
22. Genome-wide expression monitoring in Saccharomyces cerevisiae
23. Yeast bZip proteins mediate pleiotropic drug and metal resistance
24. GSH1, which encodes gamma-glutamylcysteine synthetase, is a target gene for yAP-1 transcriptional regulation