SCOPUS 정보 검색 플랫폼

Computers and Chemistry

Volumn 26, Issue 5, 2002, Pages 421-436

Pairwise sequence alignment using a PROSITE pattern-derived similarity score

(2) Comet, J P a Henry, Jacques b

a UNIVERSITÉ D EVRY VAL D ESSONNE (France)

b INRIA ROCQUENCOURT (France)

Author keywords

Databank scanning; Dynamic programming; PROSITE; Sequence alignment

Indexed keywords

ALGORITHMS; COSTS; DYNAMIC PROGRAMMING; PROTEINS;

SEQUENCE ALIGNMENT;

MOLECULAR BIOLOGY;

PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; AUTOMATED PATTERN RECOGNITION; CHEMISTRY; CLASSIFICATION; COMPUTER PROGRAM; GENETIC DATABASE; METHODOLOGY; MOLECULAR GENETICS; PROTEIN MOTIF; SEQUENCE ALIGNMENT;

ALGORITHMS; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; DATABASES, GENETIC; MOLECULAR SEQUENCE DATA; PATTERN RECOGNITION, AUTOMATED; PROTEINS; SEQUENCE ALIGNMENT; SOFTWARE; SOFTWARE DESIGN;

EID: 0035984479 PISSN: 00978485 EISSN: None Source Type: Journal
DOI: 10.1016/S0097-8485(02)00005-0 Document Type: Article

Times cited : (13)

References (24)

1
- 0025183708
- Basic local alignment search tool
- (1990) J. Mol. Biol. , vol.215 , pp. 403-410
- Altschul, S.F.¹ Gish, W.² Miller, W.³ Myers, E.W.⁴ Lipman, D.J.⁵

2
- 0030801002
- Gapped blast and psi-blast: A new generation of protein database search programs
- (1997) Nucleic Acids Res. , vol.25 , Issue.17 , pp. 3389-3402
- Altschul, S.F.¹ Madden, T.L.² Schäffer, A.A.³ Zhang, J.⁴ Zhang, Z.⁵ Miller, W.⁶ Lipman, D.J.⁷

3
- 0030861438
- The swiss-prot protein sequence data bank and its supplement trembl
- (1997) Nucleic Acids Res. , vol.25 , Issue.1 , pp. 31-36
- Bairoch, A.¹ Apweiler, R.²

4
- 0023571979
- Evaluation and improvements in the automatic alignment of protein sequences
- (1987) Protein Eng. , vol.1 , Issue.2 , pp. 89-94
- Barton, G.¹ Sternberg, M.²

5
- 0030929643
- LASSAP: A large scale sequence comparison package
- (1997) Comp. Appl. BioSci. , vol.13 , Issue.2 , pp. 137-143
- Glémet, E.¹ Codani, J.-J.²

6
- 0023984770
- Profile scanning for three-dimensional structural patterns in protein sequences
- (1988) Comput. Appl. Biosci. , vol.4 , Issue.1 , pp. 61-66
- Gribskov, M.¹ Homyak, M.² Edenfield, J.³ Eisenberg, D.⁴

7
- 0032944238
- The prosite database, its status in 1999
- (1999) Nucleic Acids Res. , vol.27 , pp. 215-219
- Hofmann, K.¹ Bucher, P.² Falquet, L.³ Bairoch, A.⁴

8
- 0028700537
- Aligning genomes with inversions and swaps
- (1994) ISMB , pp. 195-202
- Holloway, J.L.¹ Cull, P.²

9
- 0002666415
- A context dependent method for comparing sequences
- Springer-Verlag, vol. 807 of LNCS
- (1994) 5th Annual Symposium CPM , pp. 54-63
- Huang, X.¹

10
- 0025259313
- Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
- (1990) Proc. Natl. Acad. Sci. , vol.87 , pp. 2264-2268
- Karlin, S.¹ Altschul, S.F.²

11
- 0027081080
- Prosearch: Fast searching of protein sequences with regular expression patterns related to protein structure and function
- (1992) Biotechniques , vol.13 , pp. 919-921
- Kolakowski, L.¹ Leunissen, J.² Smith, J.³

12
- 0004208863
- New York: Oxford University Press
- (1997) Genes IV
- Lewin, B.¹

13
- 0003547443
- Reading, Massachusetts: Addison-Wesley
- (1977) The Theory of Information and Coding. Encyclopedia of Mathematics and its Applications , vol.3
- McEliece, R.J.¹

14
- 0028401943
- Constructing aligned sequence blocks
- (1994) J. Comput. Biol. , vol.1 , Issue.1 , pp. 51-64
- Miller, W.¹ Boguski, M.² Raghavachari, B.³ Zhang, Z.⁴ Hardison, R.⁵

15
- 0014757386
- A general method applicable to the search for similarities in the amino acid sequence of two proteins
- (1970) J. Mol. Biol. , vol.48 , pp. 443-453
- Needleman, S.B.¹ Wunsch, C.D.²

16
- 0037190356
- in press
- (2002) Motif statistics. Theoretical Computer Science
- Nicodéme, P.¹ Salvy, B.² Flajolet, P.³

17
- 84958051478
- Motif statistics
- Springer-Verlag, Proc. European Symposium on Algorithms, Prague
- (1999) ESA '99, Vol. 1643 of Lecture Notes in Computer Science , vol.1643 , pp. 194-211
- Nicodéme, P.¹ Salvy, B.² Flajolet, P.³

18
- 0006877666
- Musca: An algorithm for constrained alignment of multiple data sequences
- Tokyo, Japan
- (1998) Proceedings 9th Workshop on Genome Informatics
- Parida, L.¹ Floratos, A.² Rigoutsos, I.³

19
- 0000050663
- An approximation algorithm for alignment of multiple sequences using motif discovery
- (1999) J. Comb. Optimization , vol.3 , Issue.2-3 , pp. 247-275
- Parida, L.¹ Floratos, A.² Rigoutsos, I.³

20
- 0028148466
- Visa: Visual sequence analysis for the comparison of multiple amino acid sequences
- (1994) Comput. Appl. Biosci. , vol.10 , Issue.5 , pp. 537-544
- Posfai, J.¹ Szaraz, Z.² Roberts, R.³

21
- 0026527758
- Pattern-induced multi-sequence alignment (pima) algorithm employing secondary structure-dependent gap penalties for comparitive protein modelling
- (1992) Protein Eng. , vol.5 , pp. 35-41
- Smith, R.¹ Smith, T.²

22
- 40849099796
- Comparison of biosequences
- (1981) Adv. Appl. Math. , vol.2 , pp. 482-489
- Smith, T.F.¹ Waterman, M.S.²

23
- 0019887799
- Identification of common molecular subsequences
- (1981) J. Mol. Biol. , vol.147 , pp. 195-197
- Smith, T.F.¹ Waterman, M.S.²

24
- 0021451172
- The context dependent comparison of biological sequences
- (1984) SIAM J. Appl. Math. , vol.44 , pp. 557-567
- Wilbur, W.J.¹ Lipman, D.J.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.