Ab initio phasing of high-symmetry macromolecular complexes: Successful phasing of authentic poliovirus data to 3.0 Å resolution

Journal of Molecular Biology

Volumn 307, Issue 2, 2001, Pages 499-512

  Miller, Stephen T ^a,b   Hogle, James M ^a,c   Filman, David J ^c  

^a HARVARD UNIVERSITY   (United States)

^b PRINCETON UNIVERSITY   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

ab initio phase determination; Genetic algorithm; Low resolution crystallography; Phase extension; Virus crystallography

Indexed keywords

VIRUS PROTEIN;

ALGORITHM; ARTICLE; CRYSTAL STRUCTURE; GENETIC MODEL; NONHUMAN; POLIOMYELITIS VIRUS; PRIORITY JOURNAL; PROTEIN STRUCTURE; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

POLIOVIRUS;

EID: 0035937248     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.4485     Document Type: Article

References (51)

1. The shake-and-bake structure determination of triclinic lysozyme
2. Packed protein bilayers in the 0.90 Å resolution structure of a designed alpha helical bundle
3. New developments in phase refinement
4. Determination of phases by the conditions of non-crystallographic symmetry
5. Solution of the phase equations representing non-crystallographic symmetry
6. Relationships among structure factors due to identical molecules in different crystallographic environments
7. Phase determination using non-crystallographic symmetry
8. A linear analysis of the non-crystallographic symmetry problem
9. Geometric sources of redundancy in intensity data and their use for phase determination
10. An application of the molecular replacement technique in direct space to a known protein structure
11. Structure determination of Panulirus interruptus haemocyanin at 3.2 Å resolution. Successful phase extension by sixfold density averaging
12. Structure of a human common cold virus and functional relationship to other picornaviruses
13. Three-dimensional structure of poliovirus at 2.9 Å resolution
14. Ab initio phase determination for viruses with high symmetry: A feasibility study
15. Structure determination of the bacteriophage phiX174
16. Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy
17. An atomic model of the outer layer of the bluetongue virus core derived from X-ray crystallography and electron cryomicroscopy
18. The atomic structure of the bluetongue virus core
19. X-ray crystallographic structure of the Norwalk virus capsid
20. On the interpretation of small-angle X-ray solution scattering from spherical viruses
21. Determination of three-dimensional low-resolution viral structure from solution X-ray scattering data
22. Ab initio phase determination for spherical viruses: Parameter determination for spherical-shell models
23. Structure determination of monoclinic canine parvovirus
24. The structure of southern bean mosaic virus at 22.5 Å resolution
25. A low-resolution structure of rice dwarf virus determined by ab initio phasing
26. A genetic algorithm for the Ab initio phasing of icosahedral viruses
27. Molecular tectonic model of virus structural transitions: The putative cell entry states of poliovirus
28. Methods and programs for direct-space exploitation of geometric redundancies
29. Rotation function calculations with GLRF program
30. Preliminary studies of crystals of poliovirus type I
31. Collection of very low resolution protein data
32. Structural studies of poliovirus mutants that overcome receptor defects
33. The three-dimensional structure of canine parvovirus and its functional implications
34. A pseudo-cell based approach to efficient crystallographic refinement of viruses
35. Electron density map of apoferritin at 2.8 Å resolution
36. The crystal structure of Dps, a ferritin homolog that binds and protects DNA
37. The crystal structure of the bacterial chaperonin GroEL at 2.8 Å
38. The crystal structure of the GroES co-chaperonin at 2.8 Å resolution
39. Structure of 20 S proteasome from yeast at 2.4 Å resolution
40. Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
41. Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 Å resolution
42. Structure of the influenza virus glycoprotein antigen neuraminidase at 2.9 Å resolution
43. Intensity-based domain refinement of oriented but unpositioned molecular replacement models
44. Extension of molecular replacement - A new search strategy based on Patterson correlation refinement
45. Structure determination of echovirus 1
46. Low-resolution real-space envelopes: An approach to the ab initio macromolecular phase problem
47. Processing of difraction data collected in oscillation mode
48. Improved methods for building protein models in electron density maps and the location of errors in these models