Packed protein bilayers in the 0.90 Å resolution structure of a designed alpha helical bundle

Protein Science

Volumn 8, Issue 7, 1999, Pages 1400-1409

  Privé, Gilbert G ^a   Anderson, Daniel H ^b   Wesson, Laura ^b   Cascio, Duilio ^b   Eisenberg, David ^b  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Atomic resolution; Biomaterial; Crystal engineering; Peptide design; Peptide physics

Indexed keywords

BIOMATERIAL; SYNTHETIC PEPTIDE;

ALPHA HELIX; AMINO ACID COMPOSITION; ARTICLE; BILAYER MEMBRANE; CARBOXY TERMINAL SEQUENCE; COMPUTER PROGRAM; CRYSTAL STRUCTURE; HYDROGEN BOND; MOLECULAR MODEL; PEPTIDE SYNTHESIS; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; STRUCTURE ANALYSIS;

EID: 0032769699     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.8.7.1400     Document Type: Article

References (29)

1. Anderson DH, Weiss MS, Eisenberg D. 1996. A challenging case for protein crystal structure determination: The mating pheromone Er-1 from Euplotes raikovi. Acta Cryst D52(3):469-480.
2. Betz S, Raleigh D, DeGrado W, Lovejoy B, Anderson DH, Ogihara N, Eisenberg D. 1996. Crystallization of a unique state from a molten globular ensemble. Folding Design 1(1):57-64.
3. Blessing RH, Guo DY, Langs DA. 1996. Statistical expectation value of the Debye-Waller Factor and E(hkl) values for macromolecular crystals. Acta Cryst D52:257-266.
4. Blessing RH, Guo DY, Langs DA. 1998. Intensity statistics and normalization. In: Fortier S, ed. Direct methods for solving macromolecular structures, NATO ASI Series Volume, Ser. C: Mathematical and Physical Sciences, Vol. 507. Dordrecht, The Netherlands: Kluwer Academic Publishers, pp 47-71.
5. Brünger AT. 1997. Free R value: Cross-validation in crystallography. Methods Enzymol 277:366-396.
6. CCP4 (Collaborative Computing Project #4). 1994. The CCP4 suite: Programs for protein crystallography. Acta Cryst D50:760-763.
7. Chou PY, Fasman GD. 1978. Prediction of the secondary structure of proteins from their amino acid sequence. Adv Enzymol 47:45-148.
8. Dickerson RE. 1990. What do we really know about B-DNA. In: Sarma RH, Sarma MH, eds. Structure and methods, vol. 3: DNA and RNA. New York: Adenine Press.
9. Eisenberg D, Wilcox W, Eshita SM, Pryciak PM, Ho SP, DeGrado WF. 1986. The design, synthesis, and crystallization of an alpha-helical peptide. Proteins Struct Funct Genet 1:16-22.
10. Engh RA, Huber R. 1991. Accurate bond length and angle parameters for X-ray protein-structure refinement. Acta Cryst A47:392-400.
11. Hill CP, Anderson DH, Wesson L, DeGrado WF, Eisenberg D. 1990. Crystal structure of α-1: Implications for protein design. Science 249:543-546.
12. Hooft RWW, Vriend G, Sander C, Abola EE. 1996. Errors in protein structures. Nature 381:212.
13. Jones S, Thornton JM. 1996. Principles of protein-protein interactions. Proc Natl Acad Sci USA 93:13-20.
14. Jones TA, Kjeldgaard M. 1993. The O computer graphics program. Sweden: Uppsala University.
15. Karle IL, Flippen-Anderson JL, Uma K, Balaram P. 1990. Parallel zippers formed by α-helical peptide columns in crystals of Boc-Aib-Glu(OBzl)-Leu-Aib-Ala-Leu-Aib-Ala-Lys(Z)-Aib-Ome. Proc Natl Acad Sci USA 87(20):7921-7925.
16. Matthews BW. 1968. Solvent content of protein crystals. J Mol Biol 33:491-497.
17. McRee DE. 1993. Practical protein crystallography. San Diego, California: Academic Press.
18. Merritt E, Bacon DJ. 1997. Raster3D: Photorealistic molecular graphics. Methods Enzymol 277:505-524.
19. Miller R, DeTitta GT, Jones R, Langs DA, Weeks CM, Hauptman HA. 1993. On the application of the minimal principle to solve unknown structures. Science 259:1430-1433.
20. Miller R, Gallo SM, Khalak HG, Weeks CM. 1994. SnB: Crystal structure determination via Shake-and-Bake. J Appl Cryst 27:613-621.
21. d: Implications for engineering crystals and supramolecular assemblies. Protein Sci 6:80-88.
22. Otwinowski Z, Minor W. 1997. Processing of diffraction data collected in oscillation mode. Methods Enzymol 276:307-326.
23. Patterson WR, Anderson DH, DeGrado WF, Cascio D, Eisenberg D. 1999. Centrosymmetric bilayers in the 0.75 Å resolution structure of a designed alpha-helical peptide, D,L-Alpha-1. Protein Sci 8:1410-1422.
24. Schafmeister CE, Miercke LJW, Stroud RM. 1993. Structure at 2.5 Å of a designed peptide that maintains solubility of membrane proteins. Science 262:734-738.
25. Sheldrick GM, Schneider TR. 1997. SHELXL: High-resolution refinement. Methods Enzymol 277:319-343.
26. Smith JL, Hendrickson WA, Honzatko RB, Sheriff S. 1986. Structural heterogeneity in protein crystals. Biochemistry 25:5018-5027.
27. Taylor KS, Lou M-Z, Chin T-M, Yang NC, Garavito RM. 1996. A novel, multilayer structure of a helical peptide. Protein Sci 5:414-421.
28. Weiss MS, Anderson DH, Raffioni S, Bradshaw RA, Ortenzi C, Luporini P, Eisenberg D. 1995. A cooperative model for receptor recognition and cell adhesion: Evidence from the molecular packing in the 1.6 Å crystal structure of the pheromone Er-1 from the ciliated protozoan Euplotes raikovi. Proc Natl Acad Sci USA 92:10172-10176.
29. Wen D, Laursen RA. 1992. Structure-function relationships in an antifreeze polypeptide. The role of neutral, polar amino acids. J Biol Chem 267(20): 14102-14108.