A mathematical approach to predict the affinity of estrogen receptors α and β binding to DNA

Molecular and Cellular Endocrinology

Volumn 182, Issue 1, 2001, Pages 109-119

  Tyulmenkov, V V ^a   Klinge, C M ^a  

^a University of Louisville School of Medicine   (United States)

Author keywords

Direct repeats (DR); Estrogen receptor (ER); Estrogen response element (ERE); Kd; Transient transfection

Indexed keywords

ESTROGEN RECEPTOR ALPHA; ESTROGEN RECEPTOR BETA;

ARTICLE; BINDING AFFINITY; DNA BINDING; DNA SEQUENCE; ESTROGEN RESPONSIVE ELEMENT; GENETIC TRANSFECTION; HUMAN; HUMAN CELL; MATHEMATICS; PREDICTION; PRIORITY JOURNAL; REGRESSION ANALYSIS;

ANIMALS; BINDING, COMPETITIVE; DNA; DNA-BINDING PROTEINS; ELECTROPHORETIC MOBILITY SHIFT ASSAY; ESTROGEN RECEPTOR ALPHA; ESTROGEN RECEPTOR BETA; GENES, REPORTER; HUMANS; MODELS, THEORETICAL; PROTEIN BINDING; RATS; RECEPTORS, ESTROGEN; RESPONSE ELEMENTS; TANDEM REPEAT SEQUENCES; TRANS-ACTIVATION (GENETICS);

EID: 0035920824     PISSN: 03037207     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0303-7207(01)00508-1     Document Type: Article

References (42)

1. The effect of free DNA on the interactions of the estrogen receptor bound to hormone, partial antagonist or pure antagonist with target DNA
2. Estrogen receptor alpha interaction with estrogen response element half-sites from the rat prolactin gene
3. Characterization of the proximal estrogen-responsive element of human cathepsin D gene
4. Isolation of four rat creatine kinase genes and identification of multiple potential promoter sequences within the rat brain creatine kinase promoter region
5. Quantitative characterization of the interaction between purified human estrogen receptor alpha and DNA using fluorescence anisotropy
6. Quantitative determination of DNA-binding parameters for the human estrogen receptor in a solid-phase, nonseparation assay
7. Estrogen receptors alpha and beta form heterodimers on DNA
8. Uterine estrogen receptor-DNA complexes: effects of different ERE sequences, ligands, and receptor forms
9. Sequence requirements for estrogen receptor binding to estrogen response elements
10. Sequence-dependent DNA structure. The role of base stacking interactions
11. Identification of an estrogen response element in the 3′-flanking region of the murine c-fos protooncogene
12. Interaction of human estrogen receptors alpha and beta with the same naturally occurring estrogen response elements
13. The orphan nuclear receptor SHP inhibits agonist-dependent transcriptional activity of estrogen receptors ERα and ERβ
14. A 13 bp palindrome is a functional estrogen responsive element and interacts specifically with estrogen receptor
15. Specific binding of estrogen receptor to the estrogen response element
16. Role of estrogen receptor ligand and estrogen response element sequence on interaction with chicken ovalbumin upstream promoter transcription factor (COUP-TF)
17. Estrogen receptor interaction with co-activators and co-repressors
18. Cooperative estrogen receptor interaction with consensus or variant estrogen responsive elements in vitro
19. COUP-TF interacts with estrogen receptor, binds to estrogen response elements and half-sites, and modulates estrogen-induced gene expression
20. The aryl hydrocarbon receptor (AHR)/AHR nuclear translocator (ARNT) heterodimer interacts with naturally occuring estrogen responsive element in vitro
21. Cloning of a novel estrogen receptor expressed in rat prostate and ovary
22. The nuclear orphan receptors COUP-TF and ARP-1 positively regulate the trout estrogen receptor gene through enhancing autoregulation
23. The nuclear receptor superfamily: the second decade
24. ERβ: Identification and characterization of a novel human estrogen receptor
25. Estrogen receptor binding to a DNA response element in vitro is not dependent upon estradiol
26. Estrogen receptor binding to DNA: affinity for nonpalindromic elements from the rat prolactin gene
27. Bending of a highly repetitive component in rat nuclear DNA
28. Estrogen receptor affinity and location of consensus and imperfect estrogen response elements influence transcription activation of simplified promoters
29. Equilibrium binding of estrogen receptor with DNA using fluorescence anisotropy
30. Hydroxylapatite 'batch' assay for estrogen receptor: Increased sensitivity over present receptor assays
31. Properties of a high-affinity DNA binding site for estrogen receptor
32. Differential DNA-binding abilities of estrogen receptor occupied with two classes of antiestrogens: studies using human estrogen receptor overexpressed in mammalian cells
33. The high mobility group protein 1 enhances binding of the estrogen receptor DNA binding domain to the estrogen response element
34. Effects of multiple estrogen responsive elements, their spacing and location on estrogen response of reporter genes
35. The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation
36. The uteroglobin promoter contains a noncanonical estrogen responsive element
37. Differential molecular mechanism of the estrogen action that regulates lactoferrin gene in human and mouse
38. Interaction of tetrahydrocrysene ketone with estrogen receptor a and b indicates conformational differences in the receptor subtypes
39. Comparison of transcriptional synergy of estrogen receptors alpha and beta from multiple tandem estrogen response elements
40. Delineation of sites mediating estrogen regulation of the rat creatine kinase B gene
41. HMG-1 stimulates estrogen response element binding by estrogen receptor from stably transfected HeLa cells