pH-induced conformational transition in the soluble CuA domain of Paracoccus denitrificans cytochrome oxidase

Biochemistry

Volumn 40, Issue 20, 2001, Pages 6180-6189

  Gupta, Sayan ^a   Warne, Antony ^b   Saraste, Matti ^b   Mazumdar, Shyamalava ^a  

^a TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADSORPTION; CONFORMATIONS; OXIDATION; PH EFFECTS; PROTEINS; SPECTROSCOPIC ANALYSIS;

DEPROTONATION;

BIOCHEMISTRY;

ARTICLE; CHEMICAL REACTION KINETICS; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; MATHEMATICAL ANALYSIS; NONHUMAN; PARACOCCUS DENITRIFICANS; PH MEASUREMENT; PRIORITY JOURNAL; PROTEIN STRUCTURE; ULTRAVIOLET RADIATION;

BINDING SITES; CIRCULAR DICHROISM; COPPER; ELECTRON TRANSPORT COMPLEX IV; HYDROGEN-ION CONCENTRATION; KINETICS; OXIDATION-REDUCTION; PARACOCCUS DENITRIFICANS; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; SOLUBILITY; SPECTROPHOTOMETRY, ULTRAVIOLET; TEMPERATURE; THERMODYNAMICS; UREA;

EID: 0035918556     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi002212e     Document Type: Article

References (36)

1. Saraste, M. (1990) Q. Rev. Biophys. 23, 331-336.
2. Wikstrom, M., Krab, K., and Saraste, M. (1981) in Cytochrome Oxidase A Synthesis, Academic Press, New York.
3. Saraste, M. (1999) Science 283, 1488-1493.
4. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1996) Science 272, 1136-1144.
5. Wikstrom, E., Ed. (1998) Minireview Series: Cytochrome Oxidase: Structure and Mechanism, Journal of Bioenergetics and Biomembranes, Vol. 30, Plenum, New York.
6. Wilmanns, M., Lappalainen, P., Kelly, M., Sauer-Eriksson, E., and Saraste, M. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 11955-11959.
7. Williamss, P. A., Blackburn, N. J., Sanders, D., Bellamy, H., Stura, E. A., Fee, J. A., and McRee, D. E. (1999) Nat. Struct. Biol. 6, 509-516.
8. Ostermeier, C., Harrenga, A., Ermler, U., and Michel, H. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 10547-10553.
9. Iwata, S., Ostermeier, C., Ludwig, B., and Michel, H. (1995) Nature 376, 660-669.
10. Zumft, W. G., and Kroneck, P. M. H. (1996) Adv. Inorg. Biochem. 11, 193-221.
11. Sykes, A. G. (1991) Adv. Inorg. Chem. 36, 175-408.
12. Farrar, A. J., Lappalainen, P., Zumft, W. G., Saraste, M., and Thomson, A. J. (1995) Eur. J. Biochem. 232, 294-303.
13. Lappalainen, P., Asas, R., Malmstrom, B. G., and Saraste, M. (1993) J. Biol. Chem. 268, 26416-26421.
14. Blackburn, N. J., Barr, M. E., Woodruff, W. H., van der Ooost, J., and de Vries, S. (1994) Biochemistry 33, 10401-10407.
15. Dennison, C., Berg, A., de Vries, S., and Canters, G. W. (1996) FEBS Lett. 394, 340-344.
16. Slutter, C. E., Sanders, D., Wittumg, P., Malmstrom, B. G., Asa, R., Richards, J. H., Gray, H. B., and Fee, J. A. (1996) Biochemistry 35, 3387-3395.
17. Salgado, J., Warmerdam, G., Bubacco, L., and Canters, W. (1998) Biochemistry 37, 7378-7389.
18. Oost, J., Lappalainen, P., Musacchio, A., Warne, A., Lemienux, L., Rumbley, J., Gennis, R. B., Aasa, R., Pascher, T., Malmstrom, B. G., and Sarate, M. (1992) EMBO J. 11, 3209-3217.
19. Hay, M. T., Ang, M. C., Gamalin, D. R., Solomon, E. I., Antholine, W. E., Ralle, M., Blackburn, N. J., Wang, M. X., Kwon, A. H., and Lu, Y. (1998) Inorg. Chem. 37, 191-198.
20. Hay, M., Richards, J. H., and Lu, Y. (1996) Proc. Natl. Acad Sci. U.S.A. 93, 461-464.
21. Luchinat, C., Soriano, A., Djinovic-Carugo, K., Saraste, M., Malmstrom, B. G., and Bertini, I. (1997) J. Am. Chem. Soc. 119, 11023-11027.
22. Farrar, A. J., Neese, F., Lappalainen, P., Kroneck, P. M. H., Saraste, M., Zumft, W. G., and Thomson, A. J. (1996) J. Am. Chem. Soc. 118, 11501-11514.
23. Farver, O., Lu, Y., Ang, M. C., and Pecht, I. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 899-902.
24. Lappalainen, P., Watmough, N. J., Greenwood, C., and Saraste, M. (1995) Biochemistry 34, 5824-5830.
25. Wittung, P., Kallebring, B., and Malmstrom, B. G. (1994) FEBS Lett. 349, 286-288.
26. Holm, L., Saraste, M., and Wikstrom, M. (1987) EMBO J. 6, 2819-2823.
27. Pace, C. N. (1996) Methods Enzymol. 131, 266-280.
28. Bolen, D. W., and Santoro, M. M. (1988) Biochemistry 27, 8069-8074.
29. Wittung-Stafshede, P., Malmstrom, B. G., Sanders, D., Fee, J. A., Winkler, J. R., and Gray, H. B. (1998) Biochemistry 37, 3172-3177.
30. Bohm, G., Muhr, R., and Jaenicke, R. (1992) Protein Eng. 5, 191.
31. Winkler, J. R., Wittung-Stafshede, P., Leckner, J., Malmstrom, B. G., and Gray, H. B. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 4246-4249.
32. Pascher, T., Chesick, J. P., Winkler, J. R., and Gray, H. B. (1996) Science 271, 1558-1560.
33. Robinson, H., Ang, M. C., Gao, Y., Hay, M. T., Lu, Y., and Wang, A. H. (1999) Biochemistry 38, 5677-5683.
34. Gamelin, D. R., Randall, W, D., Hay, M. T., Houser, R. P., Mulder, T. C., Canters, G. W., de Vries, S., Tolman, W. B., Lu, Y., and Solomon, E. I. (1998) J. Am. Chem. Soc. 120, 5246-5263.
35. Leckner, J., Wittung, P., Bonander, N., Karlsson, B. G., and Malmstrom, B. G. (1997) J. Biol. Inorg. Chem. 2, 368-371.
36. Fersht, A. (1977) in Enzyme Structure and Mechanism, 2nd ed., Chapter 4, W. H. Freeman and Co., New York.