Massive parallel analysis of the binding specificity of histone-like protein HU to single- and double-stranded DNA with generic oligodeoxyribonucleotide microchips

Nucleic Acids Research

Volumn 29, Issue 12, 2001, Pages 2654-2660

  Krylov, Alexander S ^a   Zasedateleva, Olga A ^a   Prokopenko, Dmitry V ^a   Rouviere Yaniv, Josette ^b   Mirzabekov, Andrei D ^a,c  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^b INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

^c ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; BACTERIAL PROTEIN; CYTOSINE; DOUBLE STRANDED DNA; FLUORESCEIN ISOTHIOCYANATE; FLUORESCENT DYE; GUANINE; HISTONE; OLIGODEOXYRIBONUCLEOTIDE; POLYACRYLAMIDE GEL; SINGLE STRANDED DNA; THYMINE;

ARTICLE; BASE PAIRING; BINDING AFFINITY; CONTROLLED STUDY; DNA FLANKING REGION; DNA HYBRIDIZATION; DNA MICROARRAY; DNA PROTEIN COMPLEX; DNA SEQUENCE; FLUORESCENCE; FLUORESCENCE MICROSCOPE; GENETIC STABILITY; IMMOBILIZATION; MELTING POINT; PRIORITY JOURNAL; PROTEIN DNA BINDING;

EID: 0035875344     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.12.2654     Document Type: Article

References (27)

1. Contact between the LAC repressor and DNA revealed by methylation
2. DNase I fingerprinting
3. Quantitative nucleic acids footprinting thermodynamic and kinetic approaches
4. Use of capillary electrophoresis in the study of ligand-DNA interactions
5. Mechanism of recognition of AT-pairs in DNA molecules of the dye Hoechst 33258
6. DNA analysis and diagnostics on oligonucleotide microchips
7. Accessing genetic information with high-density DNA arrays
8. Genome-wide expression monitoring in Saccharomyces cerevisiae
9. Cluster analysis and display of genome-wide expression patterns
10. Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes
11. How Cro and λ-repressors distinguish between operators: The structural basis underlying a genetic switch
12. Characterization of a novel, low-molecular-weight DNA-binding protein from Escherichia coli
13. Localization of the HU protein on the Escherichia coli nucleoid
14. Regulation of HU α and HU β by CRP and FIS in Escherichia coli
15. The binding motif recognized by HU on both nicked and cruciform DNA
16. Native Escherichia coli HU protein is a heterotypic dimer
17. E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNA
18. DNA-binding parameters of the HU protein of Escherichia coli to cruciform DNA
19. Differential binding of the Escherichia coli HU, homodimeric forms and heterodimic form to linear, gapped and cruciform DNA
20. Massive parallel analysis of DNA-Hoechst 33258 binding specificity with a generic oligodeoxyribonucleotide microchip
21. Parallel thermodynamic analysis of duplexes on oligodeoxyribonucleotide microchips
22. Manual manufacturing of oligonucleotide, DNA and protein microchips
23. Regioselective immobilization of short oligonucleotides to acrylic copolymer gels
24. Affinity of protein HU for different nucleic acids
25. HU and IHF, two homologous histone-like proteins of Escherichia coli, form different protein-DNA complexes with short DNA fragments
26. Histone-like proteins in procaryotic organisms and their interaction with DNA