In vitro replication slippage by DNA polymerases from thermophilic organisms

Journal of Molecular Biology

Volumn 312, Issue 2, 2001, Pages 323-333

  Viguera, Enrique ^a   Canceill, Danielle ^a   Ehrlich, S Dusko ^a  

^a CEMAGREF   (France)

Author keywords

Fidelity; Genetic rearrangements; Hairpin deletion; Replication slippage; Thermophilic DNA polymerases

Indexed keywords

DNA POLYMERASE; SINGLE STRANDED DNA;

ARTICLE; DNA REPLICATION; EUKARYOTE; GENE AMPLIFICATION; GENE DELETION; GENE REARRANGEMENT; GENE REPLICATION; GEOBACILLUS STEAROTHERMOPHILUS; IN VITRO STUDY; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROKARYOTE; THERMOCOCCUS; THERMOPHILIC BACTERIUM; THERMUS AQUATICUS;

BACILLUS STEAROTHERMOPHILUS; EUKARYOTA; GEOBACILLUS STEAROTHERMOPHILUS; PROKARYOTA; PYROCOCCUS ABYSSI; PYROCOCCUS FURIOSUS; THERMOCOCCUS LITORALIS; THERMUS AQUATICUS;

EID: 0035860344     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.4943     Document Type: Article

References (33)

1. Replication fork arrest and DNA recombination
2. Frameshift mutations and the genetic code
3. Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli
4. The influence of primary and secondary DNA structure in deletion and duplication between direct repeats in Escherichia coli
5. Differential DNA secondary structure-mediated deletion mutation in the leading and lagging strands
6. Replication slippage between distant short repeats in Saccharomyces cerevisiae depends on the direction of replication and the RAD50 and RAD52 genes
7. In vivo and in vitro evidence for slipped mispairing in mammalian mitochondria
8. Stabilization of diverged tandem repeats by mismatch repair: Evidence for deletion formation via a misaligned replication intermediate
9. Deletions at stalled replication forks occur by two different pathways
10. Slipped misalignment mechanisms of deletion formation: Analysis of deletion endpoints
11. Copy-choice illegitimate DNA recombination revisited
12. Copy-choice recombination mediated by DNA polymerase III holoenzyme from Escherichia coli
13. Replication slippage involves DNA polymerase pausing and dissociation
14. Replication slippage of different DNA polymerases is inversely related to their strand-displacement efficiency
15. Thermostable DNA polymerases
16. Deletion mutagenesis during polymerase chain reaction: Dependence on DNA polymerase
17. Minimizing deletion mutagenesis artifact during Taq DNA polymerase PCR by E. coli SSB
18. High fidelity DNA synthesis by the Thermus aquaticus DNA polymerase
19. PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases
20. Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity, strand-displacement, and exonuclease activities
21. Amplification of padlock probes for DNA diagnostics by cascade rolling circle amplification or the polymerase chain reaction
22. Additive effects of bovine serum albumin, dithiothreitol, and glycerol on PCR
23. Sequence of the cDNA encoding ovine tumor necrosis factor-alpha: Problems with cloning by inverse PCR
24. Determination of the base composition of DNA from its thermal denaturation temperature
25. Elementary steps of base recognition and helix-coil transitions in nucleic acids
26. Single-stranded DNA binding protein facilitates amplification of genomic sequences by PCR
27. Cloning, overexpression, and purification of the recombinant His-tagged SSB protein of Escherichia coli and use in polymerase chain reaction amplification
28. The single-stranded DNA-binding protein of Escherichia coli
29. PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates
30. DNA recombination during PCR
31. DNA nicking favors PCR recombination
32. Stimulation and suppression of PCR-mediated recombination
33. Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I