Torsional constant of 27-mer DNA oligomers of different sequences

Biophysical Chemistry

Volumn 94, Issue 1-2, 2001, Pages 175-184

  Pedone, Francesco ^a   Mazzei, Filomena ^b   Matzeu, Mirella ^b   Barone, Flavia ^b  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

^b ISTITUTO SUPERIORE DI SANITÀ   (Italy)

Author keywords

Base stacking; Dinucleotide step rigidity; Fluorescence polarization anisotropy

Indexed keywords

DINUCLEOTIDE; DNA; OLIGOMER; OLIGONUCLEOTIDE;

ANISOTROPY; ARTICLE; BEHAVIOR; CRYSTAL; CRYSTAL STRUCTURE; DATA BASE; ENERGY; FLUORESCENCE POLARIZATION; PRIORITY JOURNAL; TEMPERATURE DEPENDENCE;

BASE SEQUENCE; BIOPOLYMERS; CIRCULAR DICHROISM; DNA; FLUORESCENCE POLARIZATION IMMUNOASSAY; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION;

EID: 0035846726     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0301-4622(01)00232-0     Document Type: Article

References (20)

1. Torsion and bending of nucleic acids studied by subnanosecond time-resolved fluorescence depolarization of intercalated dyes
2. Rotational diffusion of deformable macromolecules with mean local cylindrical symmetry
3. Conformation of short DNA fragments by modulated fluorescence polarization anisotropy
4. Rotational dynamics of curved DNA fragments studied by fluorescence polarization anisotropy
5. Structural and dynamical properties of two DNA oligomers with the same base composition and different sequence
6. Effect of temperature on DNA secondary structure in the absence and presence of 0.5 M tetramethylammonium chloride
7. Triple helix oligomer melting measured by fluorescence polarization anisotropy
8. X-ray footprinting and fluorescence polarization anisotropy of a 30-mer synthetic DNA fragment with one 2′-deoxy-7-hydro-8-oxoguanosine lesion
9. DNA, RNA and hybrid RNA-DNA oligomers of identical sequence: Structural and dynamic differences
10. Stereochemical basis of DNA bending by transcription factors
11. Influence of sequence on the conformation of the B-DNA helix
12. Sequence directed flexibility of DNA and the role of cross-strand hydrogen bonds
13. A refined prediction method for gel retardation of DNA oligonucleotides from dinucleotide step parameters: Reconciliation of DNA bending models with crystal structure data
14. Oligonucleotide interaction. III Circular dichroism studies of the conformation of deoxyoligonucleotides
15. Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions
16. Torsion dynamics and depolarization of fluorescence of linear molecules. I. Theory and application to DNA
17. A fluorescent complex between ethidium bromide and nucleic acids
18. Equilibrium studies of ethidium polynucleotide interactions
19. Sequence-dependent elastic properties of DNA