Energetics and Specificity of Rat DNA Polymerase β Interactions with Template-primer and Gapped DNA Substrates

Journal of Biological Chemistry

Volumn 276, Issue 19, 2001, Pages 16123-16136

  Jezewska, Maria J ^b   Rajendran, Surendran ^b   Bujalowski, Wlodzimierz ^a  

^a University of Texas Medical Branch School of Medicine   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; ENZYMES; FLUORESCENCE; STOICHIOMETRY; TITRATION;

RATS;

DNA;

DNA; DNA DIRECTED DNA POLYMERASE BETA; DOUBLE STRANDED DNA; NUCLEOTIDE; SINGLE STRANDED DNA; PRIMER DNA;

5' UNTRANSLATED REGION; ALLOSTERISM; ARTICLE; BINDING AFFINITY; DNA CONFORMATION; ENERGY TRANSFER; ENZYME SPECIFICITY; ENZYME SUBSTRATE COMPLEX; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; RAT; STOICHIOMETRY; ANIMAL; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; DNA TEMPLATE; KINETICS; METABOLISM; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE;

ANIMALS; BASE SEQUENCE; DNA; DNA POLYMERASE BETA; DNA PRIMERS; DNA, SINGLE-STRANDED; KINETICS; MODELS, MOLECULAR; MOLECULAR WEIGHT; NUCLEIC ACID CONFORMATION; RATS; SUBSTRATE SPECIFICITY; TEMPLATES, GENETIC;

EID: 0035844159     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M010434200     Document Type: Article

References (45)

1. Kornberg, A., and Baker, T. A. (1992) DNA Replication, W. H. Freeman, New York
2. Friedberg, E. C., Walker, G. C., and Siede, W. (1995) DNA Repair and Mutagenesis, ASM Press, Washington, D. C.
3. Budd, M. E., and Campbell, J. L. (1997) Mutat. Res. 384, 157-167
4. Prasad, R., Singhal, R. K., Srivastava, D. K., Molina, J. T., Tomkinson, A. E., and Wilson, S. H. (1996) J. Biol. Chem. 271, 16000-16007
5. Hübscher, U., Nasheuer, H.-P., and Syväoja, J. E. (2000) Trends Biochem. Sci. 25, 143-147
6. Sobol, R. W., Horton, J. K., Kühn, R., Hua, G., Singhal, R. K., Prasad, R., Rajewsky, K., and Wilson, S. H. (1996) Nature 379, 183-186
7. Mullen, G. P., and Wilson, S. H. (1997) Biochemistry 36, 4713-4717
8. Wiebauer, K., and Jiricny, J. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 5842-5845
9. Matsumoto, Y., and Bogenhagen, D. F. (1989) Mol. Cell. Biol. 9, 3750-3757
10. Matsumoto, Y., Kim, K., and Bogenhagen, D. F. (1994) Mol. Cell. Biol. 14, 6187-6197
11. Singhal, R. K., Prasad, R., and Wilson, S. H. (1995) J. Biol. Chem. 270, 949-957
12. Hammond, R. A., McClung, J. K., and Miller, M. R. (1990) Biochemistry 29, 286-291
13. Hoffman, J. S., Pillaire, M. J., Maga, G., Podust, V., Hubscher, U., and Villani, G. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 5356-5360
14. Zmudzka, B. Z., SenGupta, D., Matsukage, A., Cobianchi, F., Kumar, P., and Wilson, S. H. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 5106-5110
15. Liu, D., Prasad, R., Wilson, S. H., DeRose, E. F., and Mullen, G. P. (1996) Biochemistry 35, 6188-6200
16. Pelletier, H., Sawaya, M. R., Kumar, A., Wilson, S. H., and Kraut, J. A. (1994) Science 264, 1891-1903
17. Pelletier, H., Sawaya, M. R., Wolfle, W., Wilson, S. H., and Kraut, J. A. (1996) Biochemistry 35, 12762-12777
18. Kumar, A., Abbotts, J., Karawya, E. M., and Wilson, S. H. (1990) Biochemistry 29, 7156-7159
19. Casas-Finet, J. R., Kumar, A., Morris, G., Wilson, S. H., and Karpel, R. L. (1991) J. Biol. Chem. 266, 19618-19625
20. Jezewska, M. J., Rajendran, S., and Bujalowski, W. (1998) J. Mol. Biol. 284, 1113-1131
21. Singhal, R. K., and Wilson, S. H. (1993) J. Biol. Chem. 268, 15906-15911
22. Prasad, R., Beard, W. A., and Wilson, S. H. (1994) J. Biol. Chem. 269, 18096-18101
23. Wang, S.-F., and Korn, D. (1982) Biochemistry 21, 1597-1608
24. Rajendran, S., Jezewska, M. J., and Bujalowski, W. (1998) J. Biol. Chem. 273, 31021-31031
25. Edelhoch, H. (1967) Biochemistry 6, 1948-1954
26. Bujalowski, W., Klonowska, M. M., and Jezewska, M. J. (1994) J. Biol. Chem. 269, 31350-31358
27. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326
28. Jezewska, M. J., Rajendran, S., and Bujalowski, W. (1997) Biochemistry 36, 10320-10326
29. Jezewska, M. J., Kim, U.-S., and Bujalowski, W. (1996) Biochemistry 36, 2129-2145
30. Cantor, C. R., Warshaw, M. M., and Shapiro, H. (1970) Biopolymers 9, 1059-1077
31. Ledneva, R. K., Razjivin, A. P., Kost, A. A., and Bogdanov, A. A. (1977) Nuc. Acid Res. 5, 4226-4243
32. Bujalowski, W., and Jezewska, M. J. (1995) Biochemistry 34, 8513-8519
33. Jezewska, M. J., and Bujalowski, W. (1996) Biochemistry 35, 2117-2128
34. Jezewska, M. J., and Bujalowski, W. (1997) Biophys. Chem. 64, 253-269
35. Bujalowski, W., and Jezewska, M. J. (2000) Spectrophotometry & Spectrofluorimetry: A Practical Approach (Gore, M. G., ed) pp. 141-165, Oxford University Press, Oxford
36. Hill, T. L. (1985) Cooperativity Theory in Biochemistry, Springer-Verlag, New York
37. McGhee, J. D., and von Hippel, P. H. (1974) J. Mol. Biol. 86, 469-489
38. Bujalowski, W., Lohman, T. M., and Anderson, C. F. (1989) Biopolymers 28, 1637-1643
39. Epstein, I. R. (1978) Biophys. Chem. 8, 327-339
40. Matsumoto, Y., and Kim, K. (1995) Science 269, 699-702
41. Berry, R. S., Rice, S. A., and Ross, J. (1980) Physical Chemistry, pp. 738-803, John Wiley & Sons, New York
42. Jencks, W. P. (1981) Proc. Natl. Acad. Sci. U. S. A. 78, 4096-4050
43. Joyce, C. M., and Steitz, T. A. (1994) Annu. Rev. Biochem. 63, 777-822
44. Baker, B. M., Vanderkooi, J., and Kallenbach, N. R. (1978) Biopolymers 17, 1361-1372
45. Tolman, G. L., Barrio, J. R., and Leonard, N. J. (1974) Biochemistry 13, 4869-4878