Direct monitoring kinetic studies of DNA polymerase reactions on a DNA-immobilized quartz-crystal microbalance

Chemistry - A European Journal

Volumn 7, Issue 15, 2001, Pages 3305-3312

  Matsuno, Hisao ^a   Niikura, Kenichi ^a   Okahata, Yoshio ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

DNA replication; Kinetics; Klenow fragment; Quartz crystal microbalance

Indexed keywords

CATALYSIS; DNA; ENZYME IMMOBILIZATION; POLYMERIZATION; QUARTZ; RATE CONSTANTS;

MICROBALANCE;

REACTION KINETICS;

COMPLEMENTARY DNA; DNA; DNA DIRECTED DNA POLYMERASE BETA; MAGNESIUM; PRIMER DNA; SILICON DIOXIDE;

AQUEOUS SOLUTION; ARTICLE; BASE MISPAIRING; BINDING AFFINITY; BINDING SITE; CATALYSIS; CHEMISTRY; CONTROLLED STUDY; CRYSTAL; DISSOCIATION; DNA REPLICATION; DNA TEMPLATE; ELECTRODE; ENZYME KINETICS; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; IMMOBILIZATION; KINETICS; MASS; METABOLISM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; POLYMERIZATION;

BASE PAIR MISMATCH; BASE SEQUENCE; BINDING SITES; DNA POLYMERASE I; DNA PRIMERS; DNA REPLICATION; DNA, COMPLEMENTARY; ELECTRODES; ESCHERICHIA COLI; IMMOBILIZATION; KINETICS; MAGNESIUM; QUARTZ; TEMPLATES, GENETIC;

EID: 0035800523     PISSN: 09476539     EISSN: None     Source Type: Journal    
DOI: 10.1002/1521-3765(20010803)7:15<3305::AID-CHEM3305>3.0.CO;2-Y     Document Type: Article

References (38)

1. H. Klenow, I. Henningsen, Proc. Natl. Acad. Sci. USA 1971, 65, 168-175.
2. A. Kornberg, T. Baker, DNA Replication, 2nd ed., Freeman, New York, 1992.
3. D. L. Ollis, P. Brick, R. Hamlin, N. G. Xuong, T. A. Steitz, Nature 1985, 313, 762-166.
4. S. J. Benkovic, C. E. Cameron, Methods Enzymol. 1995, 262, 257-269.
5. F. R. Bryant, K. A. Johnson, S. J. Benkovic, Biochemistry 1983, 22, 3537-3546.
6. R. D. Kuchta, V. Mizrahi, P.A. Benkovic, K. A. Johnson, S. J. Benkovic, Biochemistry 1987, 26, 8410-8417.
7. D. J. Allen, S. J. Benkovic, Biochemistry 1989, 28, 9586-9593.
8. D. J. Allen, P. L. Darke, S. J. Benkovic, Biochemistry 1989, 28, 4601-4607.
9. C. R. Guest, R. A. Hochstraser, C. G. Dupuy, D. J. Allen, S. J. Benkovic, D. P. Miller, Biochemistry 1991, 30, 8759-8770.
10. K. Niikura, H. Matsuno, Y. Okahata, J. Am. Chem. Soc. 1998, 120, 8537-8538.
11. G. Sauerbrey, Z. Phys. 1959, 155, 206-222.
12. a) Y. Ebara, K. Itakura, Y. Okahata, Langmuir 1996, 12, 5165-5170;
13. b) K. Niikura, K. Nagata, Y. Okahata, Chem. Lett. 1996, 863-864;
14. c) Y. Okahata, K. Niikura, Y. Sugiura, M. Sawada, T. Morii, Biochemistry 1998, 37, 5666-5672;
15. d) K. Niikura, H. Matsuno, Y. Okahata, Chem. Eur. J. 1999, 5, 1609-1616;
16. e) Y. Okahata, M. Kawase, K. Niikura, F. Ohtake, H. Furusawa, Y. Ebara, Anal. Chem. 1998, 70, 1288-1296;
17. f) J. Wang, M. Jiang, E. Palecek, Bioelectrochem. Bioenerg. 1999, 48, 477-480;
18. g) M. Muratsugu, F. Ohta, Y. Miya, T. Hosokawa, S. Kurosawa, N. Kamo, H. Ikeda, Anal. Chem. 1993, 65, 2933-2997.
19. a) V. Marchi-Artzner, J.-M. Lehn, T. Kunitake, Langmuir 1998, 14, 6470-6478;
20. b) H. J. Kim, S. Kwak, Y. S. Kim, B. I. Seo, E. R. Kim, H. Lee, Thin Solid Films 1998, 327, 191-194;
21. c) D. E. Cliffel, A. J. Bard, S. Shinkai, Anal. Chem. 1998, 70, 4146-4151;
22. d) J. Wang, M. Jiang, T. W. Nilsen, R. C. Getts, J. Am. Chem. Soc. 1998, 120, 8281-8282;
23. e) K. Ijiro, H. Ringsdorf, E. Birch-Hirschfeld, S. Hoffmann, U. Schilken, M. Strube, Langmuir 1998, 14, 2796-2800;
24. f) S. C. Ng, X. C. Zhou, Z. K. Chen, P. Miao, H. S. O. Chan, S. F. Y. Li, P. Fu, Langmuir 1998, 14, 1748-1752;
25. g) M. D. Ward, D. A. Buttry, Science 1990, 249, 1000-1007.
26. W. Saenger, Principles of Nucleic Acid Structure, Springer, Heidelberg, 1984.
27. A. V. Scamrov, R. S. Beabealashvilli, FEBS Lett. 1988, 228, 144-148.
28. a) W.-C. Lam, E. J. C. V. derSchans, C. M. Joyce, D. P. Millar, Biochemistry 1998, 37, 1513-1522;
29. b) T. E. Carver, Jr., D. P. Millar, Biochemistry 1998, 37, 1898-1904.
30. a) T. Nomura, M. Okuhara, Anal. Chim. Acta 1982, 142, 281-283;
31. b) S. Bruckenstein, M. Shay, Electrochim. Acta 1985, 30, 1295-1298;
32. c) K. K. Kanazawa, J. Gordon, Anal. Chim. Acta 1985, 175, 99-103.
33. a) M. Yang, M. Thompson, W. C. Duncan-Hewitt, Langmuir 1993, 9, 802-806;
34. b) W. Hinsberg, C. Wilson, K. K. Kanazawa, J. Electrochem. Soc. 1986, 133, 1448-1451;
35. c) Y. Okahata, H. Ebato, Anal. Chem. 1989, 61, 2185-2188;
36. d) Y. Okahata, K. Kimura, K. Ariga, J. Am. Chem. Soc. 1989, 111, 9190-9192.
37. a) M. Yang, M. Thompson, Langmuir 1993, 9, 1990-1993;
38. b) M. Urbakh, L. Daikhin, Langmuir 1994, 10, 2836-2839.