Recognition of sequence-directed DNA structure by the Klenow fragment of DNA polymerase I

Biochemistry

Volumn 37, Issue 7, 1998, Pages 1898-1904

  Carver Jr , Theodore E ^a,b   Millar, David P ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED DNA POLYMERASE BETA;

ARTICLE; BASE MISPAIRING; BASE PAIRING; CONFORMATIONAL TRANSITION; DNA SEQUENCE; DNA TEMPLATE; MOLECULAR RECOGNITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; SPECTROFLUOROMETRY;

BASE COMPOSITION; BASE SEQUENCE; BINDING SITES; DNA; DNA POLYMERASE I; DNA PRIMERS; EXODEOXYRIBONUCLEASE V; EXODEOXYRIBONUCLEASES; FLUORESCENCE POLARIZATION; SUBSTRATE SPECIFICITY; TEMPLATES, GENETIC;

EID: 0344972696     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9720843     Document Type: Article

References (38)

1. Kunkel, T. A. (1988) Cell 53, 837-840.
2. Echols, H., and Goodman, M. F. (1991) Annu. Rev. Biochem. 60, 477-511.
3. Goodman, M. F., Creighton, S., Bloom, L. B., and Petruska, J. (1993) Crit. Rev. Biochem. Mol. Biol. 28, 83-126.
4. Petruska, J., and Goodman, M. F. (1985) J. Biol. Chem. 260, 7533-7539.
5. Mendelman, L. V., Boosalis, M. S., Petruska, J., and Goodman, M. F. (1989) J. Biol. Chem. 264, 14415-14423.
6. Joyce, C. M., Sun, X. C., and Grindley, N. D. F. (1992) J. Biol. Chem. 267, 24485-24500.
7. Bloom, L. B., Otto, M. R., Beechem, J. M., and Goodman, M. F. (1993) Biochemistry 32, 11247-11258.
8. Bloom, L. B., Otto, M. R., Eritja, R., Reha-Krantz, L. J., Goodman, M. F., and Beechem, J. M. (1994) Biochemistry 33, 7576-7586.
9. Brutlag, D., and Kornberg, A. (1972) J. Biol. Chem. 247, 241-248.
10. Freemont, P. S., Friedman, J. M., Beese, L. S., Sanderson, M. R., and Steitz, T. A. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 8924-8928.
11. Beese, L., Derbyshire, V., and Steitz, T. A. (1993) Science 260, 352-355.
12. Cowart, M., Gibson, K. J., Allen, D. J., and Benkovic, S. J. (1989) Biochemistry 28, 1975-1983.
13. Shatzky-Schwartz, M., Hiller, Y., Reich, Z., Ghirlando, R., Weinberger, S., and Minsky, A. (1992) Biochemistry 31, 2339-2346.
14. Drew, H. R., and McCall, M. J. (1990) in DNA Topology and its Effects, pp 1-56, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
15. Hagerman, P. J. (1990) Annu. Rev. Biochem. 59, 755-781.
16. Joyce, C. M., and Steitz, T. A. (1994) Annu. Rev. Biochem. 63, 777-822.
17. Ollis, D. L., Brick, P., Hamlin, R., Xuong, N. G., and Steitz, T. A. (1985) Nature 313, 762-766.
18. Carver, T. E., Hochstrasser, R. A., and Millar, D. P. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 10670-10674.
19. Derbyshire, V., Grindley, N. D. F., and Joyce, C. M. (1991) EMBO J. 10, 17-24.
20. Allen, D. J., Darke, P. L., and Benkovic, S. J. (1989) Biochemistry 29, 3612-3621.
21. Guest, C. R., Hochstrasser, R. A., Dupuy, C. G., Allen, D. J., Benkovic, S. J., and Millar, D. P. (1991) Biochemistry 30, 8759-8770.
22. O'Connor, D. V., and Philips, D. R. (1988) Time-Correlated Single Photon Counting, p 271, Academic Press, London.
23. Derbyshire, V., Freemont, P. S., Sanderson, M. R., Beese, L., Friedman, J. M., Joyce, C. M., and Steitz, T. A. (1988) Science 240, 199-201.
24. Crothers, D. M., Haran, T. E., and Nadeau, J. G. (1990) J. Biol. Chem. 265, 7093-7096.
25. Young, M. A., Ravishanker, G., Beveridge, D. L., and Berman, H. M. (1995) Biophys. J. 68, 2454-2468.
26. Chan, S. S., Breslauer, K. J., Hogan, M. E., Kessler, D. J., Austin, R. H., Ojemann, J., Passner, J. M., and Wiles, N. C. (1990) Biochemistry 29, 6161-6171.
27. Park, Y.-W., and Breslauer, K. J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 1551-1555.
28. Nelson, H. C. M., Finch, J. T., Luisi, B. F., and Klug, A. (1987) Nature 330, 221-226.
29. Yoon, C., Prive, G. G., Goodsell, D. S., and Dickerson, R. E. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 6332-6336.
30. Burkhoff, A. M., and Tullius, T. D. (1987) Cell 48, 935-943.
31. Gueron, M., Charretier, E., Hagerhorst, J., Kochoyan, M., Leroy, J. L., and Moraillon, A. (1990) in Structure and Methods. (Sarma, R. H., and Sarma, M. H., Eds.) Vol. 3: DNA and RNA, pp 207-224, Adenine Press, New York.
32. Demidov, V. V., and Potaman, V. N. (1993) Nucleic Acids Res. 21, 2691-2696.
33. Bobst, E. V., Keyes, R. S., Cao, Y. Y., and Bobst, A. M. (1996) Biochemistry 35, 9309-9313.
34. Eom, S. H., Wang, J., and Steitz, T. A. (1996) Nature 382, 278-281.
35. Kim, Y., Eom, S. H., Wang, J., Lee, D.-S., Suh, S. W., and Steitz, T. A. (1995) Nature 376, 612-616.
36. Drew, H. R., and Travers, A. A. (1984) Cell 37, 491-502.
37. Lavigne, M., Roux, P., Buc, H., and Schaeffer, F. (1997) J. Mol. Biol. 266, 507-524.
38. Lam, W.-C., Van der Schans, E. J. C., Joyce, C. M., and Millar, D. P. (1998) Biochemistry (in press).