Gene organization of bovine BCNT that contains a portion corresponding to an endonuclease domain derived from an RTE-1 (Bov-B LINE), non-LTR retrotransposable element: Duplication of an intramolecular repeat unit downstream of the truncated RTE-1

Gene

Volumn 268, Issue 1-2, 2001, Pages 59-66

  Iwashita, Shintaro ^a   Itoh, Tomohito ^b   Takeda, Haruko ^b   Sugimoto, Yoshikazu ^b   Takahashi, Ichiro ^c   Nobukuni, Takahiro ^d   Sezaki, Mariko ^a   Masui, Tohru ^e   Hashimoto, Katsuyuki ^c  

^a MITSUBISHI KASEI INST OF LIFE SCI   (Japan)

^b Shirakawa Institute of Animal Genetics   (Japan)

^c NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

^e NATIONAL INSTITUTE OF HEALTH SCIENCES   (Japan)

Author keywords

Bovine RTE 1 (Bov B LINE); BTA18; Exon; HSA16q; Intron; Ruminantia

Indexed keywords

COMPLEMENTARY DNA; ENDONUCLEASE; PROTEIN; PROTEIN BCNT; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; ANIMAL EXPERIMENT; ARTICLE; CARBOXY TERMINAL SEQUENCE; CHROMOSOME 16Q; CHROMOSOME 18; DNA FLANKING REGION; DNA SEQUENCE; EXON; GENE DUPLICATION; GENE MAPPING; GENETIC ORGANIZATION; GENETIC PROCEDURES; HUMAN; HYBRID CELL; INTRON; LONG INTERSPERSED REPEAT; LONG TERMINAL REPEAT; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN LOCALIZATION; SEQUENCE ANALYSIS; SOMATIC CELL;

3' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; CATTLE; CHROMOSOME MAPPING; EVOLUTION, MOLECULAR; EXONS; HUMANS; INTRONS; LONG INTERSPERSED NUCLEOTIDE ELEMENTS; MICE; MOLECULAR SEQUENCE DATA; PHOSPHOPROTEINS; RETROELEMENTS; RUMINANTS; SEQUENCE HOMOLOGY, NUCLEIC ACID; TERMINAL REPEAT SEQUENCES;

EID: 0035795572     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(01)00422-X     Document Type: Article

References (19)

1. Aasland M., Vage D.I., Lien S., Klungland H. Resolution of conflicting assignments for the bovine casein kinase II alpha (CSNK2A2) gene. Anim. Genet. 31:2000;131-134.
2. Burch J.B.E., Davis D.L., Haas N.B. Chicken repeat 1 elements contain a pol-like open reading frame and belong to the non-long terminal repeat class of retrotransposons. Proc. Natl. Acad. Sci. USA. 90:1993;8199-8203.
3. Diekwisch T.G.H., Marches F., Williams A., Luan X. Cloning, gene expression, and characterization of CP27, a novel gene in mouse embryogenesis. Gene. 235:1999;19-30.
4. Don R.H., Cox P.T., Wainwright B.J., Baker K., Mattick J.S. 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res. 19:1991;4008.
5. Fanning T.G., Singer M.F. LINE-1: a mammalian transposable element. Biochim. Biophys. Acta. 910:1987;203-212.
6. Iwashita S., Nobukuni T., Tanaka S., Kobayashi M., Iwanaga T., Tamate H.B., Masui T., Takahashi I., Hashimoto K. Partial nuclear localization of a bovine phosphoprotein, BCNT, that includes a region derived from a LINE repetitive sequence in Ruminantia. Biochim. Biophys. Acta. 1427:1999;408-416.
7. Kordis D., Gubensek F. Molecular evolution of Bov-B LINEs in vertebrates. Gene. 238:1999;171-178.
8. Lenstra J.A., van Boxtel J.A.F., Zwaagstra K.A., Schwerin M. Short interspersed nuclear element (SINE) sequences of the bovidae. Anim. Genet. 24:1993;33-39.
9. Malik H.S., Eickbush T.H. The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEs. Mol. Biol. Evol. 15:1998;1123-1134.
10. Malik H.S., Burke W.D., Eickbush T.H. The age and evolution of non-LTR retrotransposable element. Mol. Biol. Evol. 16:1999;793-805.
11. Nobukuni T., Kobayashi M., Omori A., Ichinose S., Iwanaga T., Takahashi I., Hashimoto K., Hattori S., Kaibuchi K., Miyata Y., Masui T., Iwashita S. An Alu-linked repetitive sequence corresponding to 280 amino acids is expressed in a novel bovine protein, but not in its human homologue. J. Biol. Chem. 272:1997;2801-2807.
12. Okada N., Hamada M. The 3′ ends of tRNA-derived SINEs originated from the 3′ ends of LINEs: a new example from the bovine genome. J. Mol. Evol. 44:1997;S52-S56.
13. Sage J., Martin L., Rassoulzadegan M., Cuzin F. Germ cell-specific enhancer activity of a repeated element in a variable region of the mouse genome. Gene. 221:1998;85-92.
14. Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A. Bovine Alu-like sequences mediate transposition of a new site-specific retroelement. Gene. 152:1995;261-264.
15. Takahashi I., Nobukuni T., Ohmori H., Kobayashi M., Tanaka S., Ohshima K., Okada N., Masui T., Hashimoto K., Iwashita S. Existence of a bovine LINE repetitive insert that appears in the cDNA of bovine protein BCNT in ruminant, but not in human, genomes. Gene. 211:1998;387-394.
16. Takeda H., Yamaguchi H., Ihara N., Hara K., Watanabe T., Sugimoto Y., Oshiro T., Kishine H., Kano Y., Kohno K. Construction of a bovine yeast artificial chromosome (YAC) library. Anim. Genet. 29:1998;216-219.
17. Tatusova T.A., Madden T.L. Blast 2 sequences - a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174:1999;247-250.
18. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
19. Youngman S., van Luenen H.G., Plasterk R.H. Rte-1, a retrotransposon-like element in Caenorhabditis elegans. FEBS Lett. 380:1996;1-7.