Identification of Salmonella typhi genes expressed within macrophages by selective capture of transcribed sequences (SCOTS)

Molecular Microbiology

Volumn 41, Issue 5, 2001, Pages 1211-1222

  Daigle, France ^a   Graham, James E ^a,b   Curtiss III, Roy ^a  

^a WASHINGTON UNIVERSITY   (United States)

^b VANDERBILT UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIGEN;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; GENE EXPRESSION; GENE SEQUENCE; GENETIC SELECTION; MACROPHAGE; MUTANT; NONHUMAN; NUTRIENT; PRIORITY JOURNAL; SALMONELLA TYPHI; SALMONELLA TYPHIMURIUM;

BACTERIAL PROTEINS; BIOTINYLATION; CELL LINE; DNA, BACTERIAL; DNA, COMPLEMENTARY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENETIC COMPLEMENTATION TEST; HUMANS; MACROPHAGES; MUTATION; NUCLEIC ACID HYBRIDIZATION; SALMONELLA TYPHI; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION, GENETIC; TYPHOID FEVER;

ANIMALIA; BACTERIA (MICROORGANISMS); MURINAE; PROKARYOTA; SALMONELLA ENTERICA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHI; SALMONELLA TYPHI; SALMONELLA TYPHIMURIUM; TYPHIMURIUM;

EID: 0035788804     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2001.02593.x     Document Type: Article

References (44)

1. Allen-Vercoe, E., Sayers, A.R., and Woodward, M.J. (1999) Virulence of Salmonella enterica serotype Enteritidis aflagellate and afimbriate mutants in a day-old chick model. Epidemiol Infect 122: 395-402.
2. Alpuche-Aranda, C.M., Berthiaume, E.P., Mock, B., Swanson, J.A., and Miller, S.I. (1995) Spacious phagosome formation within mouse macrophages correlates with Salmonella serotype, pathogenicity, and host susceptibility. Infect Immun 63: 4456-4462.
3. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
4. Altuvia, S., Almiron, M., Huisman, G., Kolter, R., and Storz, G. (1994) The dps promoter is activated by OxyR during growth and by IHF and sigma S in stationary phase. Mol Microbiol 13: 265-272.
5. Baumler, A., Tsolis, R., van der Velden, A., Stojiljkovic, I., Anic, S., and Heffron, F. (1996) Identification of a new iron regulated locus of Salmonella typhi. Gene 183: 207-213.
6. Baumler, A.J., Kusters, J.G., Stojiljkovic, I., and Heffron, F. (1994) Salmonella typhimurium loci involved in survival within macrophages. Infect Immun 62: 1623-1630.
7. Benson, N.R., Wong, R.M.-Y., and McClelland, M. (2000) Analysis of the SOS response in Salmonella enterica serovar Typhimurium using RNA fingerprinting by arbitrarily primed PCR. J Bacteriol 182: 3490-3497.
8. Boyer, H.W., and Roulland-Dussoix, D. (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41: 459-472.
9. Buchmeier, N., Bossie, S., Chen, C.-Y., Fang, F.C., Guiney, D.G., and Libby, S.J. (1997) SlyA, a transcriptional regulator of Salmonella typhimurium required for resistance to oxidative stress and is expressed in the intracellular environment of macrophage. Infect Immun 65: 3725-3730.
10. Buchmeier, N.A., and Heffron, F. (1990) Induction of Salmonella stress response upon infection of macrophages. Science 248: 730-732.
11. Chiang, S.L., Mekalanos, J.J., and Holden, D.W. (1999) In vivo analysis of bacterial virulence. Annu Rev Microbiol 53: 129-154.
12. Contreras, I., Toro, C.S., Troncoso, G., and Mora, G.C. (1997) Salmonella typhi mutants defective in anaerobic respiration are impaired in their ability to replicate within epithelial cells. Microbiol 143: 2665-2672.
13. Coulter, S.N., Schwan, W.R., Ng, E.Y.W., Langhorne, M.H., Ritchie, H.D., Westbrock-Wadman, S., et al. (1998) Staphylococcus aureus genetic loci impacting growth and survival in multiple infection environments. Mol Microbiol 30: 393-404.
14. Cummings, H.S., and Hershey, J.W. (1994) Translation initiation factor IF1 is essential for cell viability in Escherichia coli. J Bacteriol 176: 198-205.
15. Darwin, A.J., and Miller, V.L. (1999) Identification of Yersinia enterocolitica genes affecting survival in an animal host using signature-tagged transposon mutagenesis. Mol Microbiol 32: 51-62.
16. 28) regulates the expression of Salmonella genes associated with the centisome 63 type III secretion system. Infect Immun 68: 2735-2743.
17. Fields, P.I., Swanson, R.V., Haidaris, C.G., and Heffron, F. (1986) Mutants of Salmonella typhimurium that cannot survive within the macrophage are avirulent. Proc Natl Acad Sci USA 83: 5189-5193.
18. Froussard, P. (1992) A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acids Res 20: 2900.
19. Graham, J.E., and Clark-Curtiss, J.E. (1999) Identification of Mycobacterium tuberculosis RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS). Proc Natl Acad Sci USA 96: 11554-11559.
20. Grossman, D.A., Witham, N.D., Burr, D.H., Lesmana, M., Rubin, F.A., Schoolnik, G.K., and Parsonnet, J. (1995) Flagellar serotypes of Salmonella typhi in Indonesia: relationships among motility, invasiveness, and clinical illness. J Infect Dis 171: 212-216.
21. Gulig, P.A., and Curtiss, R., III (1987) Plasmid-associated virulence of Salmonella typhimurium. Infect Immun 55: 2891-2901.
22. Heithoff, D.M., Conner, C.P., and Mahan, M.J. (1997a) Dissecting the biology of a pathogen during infection. Trends Microbiol 5: 509-513.
23. Heithoff, D.M., Conner, C.P., Hanna, P.C., Julio, S.M., Hentschel, U., and Mahan, M.J. (1997b) Bacterial infection as assessed by in vivo gene expression. Proc Natl Acad Sci USA 94: 934-939.
24. Hirose, K., Ezaki, T., Miyake, M., Li, T., Khan, A., Kawamura, Y., Yokoyama, H., and Takami, T. (1997) Survival of Vi-capsulated and Vi-deleted Salmonella typhi strains in cultured macrophage expressing different levels of CD14 antigen. FEMS Microbiol Lett 147: 259-265.
25. Innis, M.A., Gelfand, D.H., Sninsky, J.J., and White, T.J. (1990) PCR Protocols: a Guide to Methods and Applications. San Diego, CA: Academic Press.
26. Kaniga, K., Compton, M.S., Curtiss, R., III and Sundaram, P. (1998) Molecular and functional characterization of Salmonella enterica serovar typhimurium poxA gene: effect on attenuation of virulence and protection. Infect Immun 66: 5599-5606.
27. Leclerc, G.J., Tartera, C., and Metcalf, E.S. (1998) Environmental regulation of Salmonella typhi invasion-defective mutants. Infect Immun 66: 682-691.
28. Leung, K.Y., and Finlay, B.B. (1991) Intracellular replication is essential for the virulence of Salmonella typhimurium. Proc Natl Acad Sci USA 88: 11470-11474.
29. Libby, S.J., Goebel, W., Ludwig, A., Bowe, F., Buchmeier, N., Songer, J.G., et al. (1994) A cytolysin from Salmonella typhimurium is required for survival in macrophages. Proc Natl Acad Sci USA 91: 489-493.
30. Liu, S., Ezaki, T., Miura, H., Matsui, K., and Yabuuchi, E. (1988) Intact motility as a Salmonella typhi invasion-related factor. Infect Immun 56: 1967-1973.
31. Morrow, B.J., Graham, J.E., and Curtiss,R. III (1999) Genomic subtractive hybridization and selective capture of transcribed sequences identify a novel Salmonella typhimurium fimbrial operon and putative transcriptional regulator that are absent from Salmonella typhi genome. Infect Immun 67: 5106-5116.
32. Nnalue, N.A., and Stocker, B.A.D. (1987) The effect of O-antigen character and enterobacterial common antigen content on the in vivo persistence of aromatic-dependent Salmonella sp. live-vaccine strains. Microb Pathog 3: 31-44.
33. Ottemann, K.M., and Miller, J.F. (1997) Roles for motility in bacterial-host interactions. Mol Microbiol 24: 1109-1117.
34. Pang, T., Bhutta, Z.A., Finlay, B.B., and Altwegg, M. (1995) Typhoid fever and other salmonelloses: a continuing challenge. Trends Microbiol 3: 253-255.
35. Park, Y., Bearson, B., Bang, S., Bang, I., and Foster, J. (1996) Internal pH crisis, lysine decarboxylase and the acid tolerance response of Salmonella typhimurium. Mol Microbiol 20: 605-611.
36. Pittard, A.J. (1996) Biosynthesis of the aromatic amino acids. In Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology. Neidhardt, F.C., Curtiss, R., III, Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington, DC: American Society for Microbiology Press, pp. 458-484.
37. Polissi, A., Pontiggia, A., Feger, G., Altieri, M., Mottl, H., Ferrari, L., and Simon, D. (1998) Large-scale identification of virulence genes from Streptococcus pneumoniae. Infect Immun 66: 5620-5629.
38. Pouyssegur, J., and Stoeber, F. (1972) Control physiologique et génétique du métabolisme du 2-céto-3-deoxy-gluconate chez E. coli K12. C R Acad Sci Hebd Seances Acad Sci D 274: 2249-2252.
39. Ralph, P., and Nakoinz, I. (1977) Antibody-dependent killing of erythrocyte and tumor targets by macrophage-related cell lines: enhancement by PPD and LPS. J Immunol 119: 950-954.
40. Schwan, W.R., Huang, X.-Z., Hu, L., and Kopecko, D.J. (2000) Differential bacterial survival, replication, and apoptosis-inducing ability of Salmonella serovars within human and murine macrophages. Infect Immun 68: 1005-1013.
41. Valdivia, R.H., and Falkow, S. (1996) Bacterial genetics by flow cytometry: rapid isolation of Salmonella typhimurium acid-inducible promoters by differential fluorescence induction. Mol Microbiol 22: 367-378.
42. Valtonen, M.V., Larinkari, U.M., Plosila, M., Valtonen, V.V., and Makela, P.H. (1976) Effect of enterobacterial common antigen on mouse virulence of Salmonella typhimurium. Infect Immun 13: 1601-1605.
43. Virlogeux, I., Waxin, H., Ecobichon, C., and Popoff, M.Y. (1995) Role of the viaB locus in synthesis, transport and expression of Salmonella typhi Vi antigen. Microbiol 141: 3039-3047.
44. Young, G.M., Schmiel, D.H., and Miller, V.L. (1999) A new pathway for secretion of virulence factors by bacteria: The flagellar export apparatus functions as a protein-secretion system. Proc Natl Acad Sci USA 96: 6456-6461.